Replace a column with a value conditional on a value in col1
Hi,
Perhaps a rather simple problem...?
I have data that looks like this.
I want to change the col6 value to 2 only if the line does not start with BPC.
I tried this, but it is changing everything to 2 at col6.
Last edited by genehunter; 11-25-2009 at 01:30 PM..
Hi all,
I appreciate the enormous amount of knowledge that flows in this forum.
I am an average UNIX user. I have many files with lines like the below. I have separated each line with space for ease of reading. I need to replace the first occurance of "/00" with null on those lines that have... (6 Replies)
Hi,
I have a Line input for awk as follows
DROP MATERIALIZED VIEW MCR.COMM_STACK;
CREATE MATERIALIZED VIEW "MCR"."COMM_STACK"
ON PREBUILT TABLE WITHOUT REDUCED PRECISION
USING INDEX
REFRESH FAST ON DEMAND START WITH sysdate+0 NEXT SYSDATE + 7
WITH PRIMARY KEY USING DEFAULT... (3 Replies)
Match column 3 in file1 to column 1 in file 2 and replace with column 2 from file2
file 1 sample
SNDK 80004C101 AT
XLNX 983919101 BB
NETL 64118B100 BS
AMD 007903107 CC
KLAC 482480100 DC
TER 880770102 KATS
ATHR 04743P108 KATS... (7 Replies)
Given this row:
|lastname1|middlename1|firstname1|lastname2|middlename2|firstname2
produce this result:
|lastname|middlename|firstname
where the resultant names are based on the presence of the #2 names above. I.e., if a #2 name is passed (usually will be null,) use that - otherwise... (8 Replies)
I need to read the contents of a file. Then I need to grep for a keyword and replace part of the grepped line based on the condition of previous and present line.
Example input file:
V {
port1 = P;
port2 = 0;
shift_port = P0; /* if next shift_port is P0 I need... (7 Replies)
I'm looking for an awk or (preferably) sed solution to search a pipe delimited file for any occurrence of an email address that does not include a designed domain, and replace the email address with a blank. E.g.
hello|smith@designateddomain.com|jones@anotherdomain.edu|1234|
turns into:
... (2 Replies)
I have two files, and I'm interested in the first two columns of each.
File1 compares set1 to set2 (column1 = set1 name, column2 = set2 name).
File2 compares set2 to set1 (column1 = set2 name, column2 =set1 name).
I want to print the set names (column values) that appear as pairs in both... (1 Reply)
Hi,
I have a file (stats.txt) with columns like in the example below. Destination IP address, timestamp, TCP packet sequence number and packet length.
destIP time seqNo packetLength
1.2.3.4 0.01 123 500
1.2.3.5 0.03 44 1500
1.3.2.5 0.08 44 1500
1.2.3.4 0.44... (12 Replies)
Hi Folks,
I'm trying tog ain further experience with shell programming and have set my a small goal of writing a little filesystem monitoring script. So far my output is as follows:
PACMYDB03
Filesystem Size Used Avail Use% Status
/usr/local/mysql/data ... (5 Replies)
Discussion started by: Axleuk
5 Replies
LEARN ABOUT DEBIAN
bio::treeio::svggraph
Bio::TreeIO::svggraph(3pm) User Contributed Perl Documentation Bio::TreeIO::svggraph(3pm)NAME
Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output
SYNOPSIS
use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
my $out = Bio::TreeIO->new(-file => '>output', -format => 'svggraph');
while( my $tree = $in->next_tree ) {
my $svg_xml = $out->write_tree($tree);
}
DESCRIPTION
This outputs a tree as an SVG graphic using the SVG::Graph API
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Brian OConnor
Email brian.oconnor-at-excite.com
CONTRIBUTORS
Allen Day Guillaume Rousse, Guillaume-dot-Rousse-at-inria-dot-fr
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::TreeIO::svggraph->new();
Function: Builds a new Bio::TreeIO::svggraph object
Returns : Bio::TreeIO::svggraph
Args :-width => image width (default 1600)
-height => image height (default 1000)
-margin => margin (default 30)
-stroke => stroke color (default 'black')
-stroke_width=> stroke width (default 2)
-font_size=> font size (default '10px')
-nomalize => undef or 'log' (default is undef)
write_tree
Title : write_tree
Usage : $treeio->write_tree($tree);
Function: Write a tree out to data stream in newick/phylip format
Returns : none
Args : Bio::Tree::TreeI object
decorateRoot
Title : _decorateRoot
Usage : internal methods
Function:
Example :
Returns :
Args :
next_tree
Title : next_tree
Usage :
Function: Sorry not possible with this format
Returns : none
Args : none
perl v5.14.2 2012-03-02 Bio::TreeIO::svggraph(3pm)