11-26-2009
it works, but it cannot handle filenames with whitespaces.
/usr/bin/time -o /tmp/time.txt -f %E find /home/ -regex ".*\.\(avi\|mp3\|mpeg\|mpg\|iso\|rar\)" -exec ls -sh {} \; |awk '{print $2" | "$1}' > /tmp/result.txt
It works until awk gets involved, when printing $2 the whitespaces gets lost.
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LEARN ABOUT DEBIAN
ncoils
NCOILS(1) User Commands NCOILS(1)
NAME
ncoils - prediction of coiled-coil secondary structure elements
SYNOPSIS
ncoils [OPTION] < [FASTA FILE]
ncoils -f < /usr/share/doc/ncoils/1srya.fa
DESCRIPTION
ncoils is a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score. By
comparing this score to the distribution of scores in globular and coiled-coil proteins, the program then calculates the probability that
the sequence will adopt a coiled-coil conformation.
OPTIONS
-f, -fasta
fasta output - coils as 'x', like '-x' in seg
-c concise mode - which sequences have any coils (and how many)
-min_seg <int>
for concise mode - only report sequence if >= min coil segments
-min_P <float>
minimum P to define coil segment; DEFAULT = 0.5
-win <int>
window size; DEFAULT = 21
-w weight heptad positions a&d the same as b,c,e,f,g
-v verbose/debug mode - print extra junk
EXAMPLES
"coils-wrap -m MTIDK -i /usr/share/doc/ncoils/1srya.fa -o /tmp/coils.out -r /tmp/coils_raw.txt && less /tmp/coils.out /tmp/coils_raw.txt"
"ncoils -win 14 < /usr/share/doc/ncoils/1srya.fa"
ENVIRONMENT
COILSDIR - specifies the directory containing the file new.mat overriding the default /usr/share/ncoils
FILES
/usr/share/ncoils/*.mat
matrix data files
AUTHOR
R.B. Russell, A.N. Lupas
COPYRIGHT AND LICENSE
GPL
Based on Lupas, Van Dyck & Stock (1991) Science 252,1162-1164
SEE ALSO
coils-wrap(1), "usr/share/doc/coils/README", http://www.russelllab.org/cgi-bin/coils/coils-svr.pl <http://www.russelllab.org/cgi-
bin/coils/coils-svr.pl>
A Lupas: Prediction and Analysis of Coiled-Coil Structures. Methods in Enzymology, 266, 513-525, 1996
A. Lupas, M. Van Dyke, and J. Stock: Predicting coiled coils from protein sequences. Science, 252, 1162-1164, 1991
2002 2011-10-29 NCOILS(1)