11-05-2009
I try both the old and new version, all get the same result which print out all the things
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my version is Linux ia64
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1. Shell Programming and Scripting
Hi,
I got a long list of contents:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Discussion started by: patrick87
2 Replies
2. Shell Programming and Scripting
My input file:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF
SDGFDGSFDGSGSDGSDGSDGSDGSDG
My... (22 Replies)
Discussion started by: patrick87
22 Replies
3. Shell Programming and Scripting
My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
Data Direction Start_time End_time Length
1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
11 Replies
4. Shell Programming and Scripting
Input file:
#abc_1
SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS
Output file:
FASFGGDSGDS
I just want to print out the read from position 5 until position 15 from the data.
Below is the code that I just try but it is failed to get my desired output:
grep -v '#' input_file | awk... (5 Replies)
Discussion started by: patrick87
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5. Shell Programming and Scripting
Input file:
>position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344
MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA
ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA
NRTS*
>position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
Discussion started by: patrick87
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6. Shell Programming and Scripting
Input file 1:
>pattern_5
GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF
ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT
SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW
>pattern_1
AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
Discussion started by: patrick87
10 Replies
7. Shell Programming and Scripting
Input:
HS04636 PROGRAM source 836 7001 + ID=g1
HS04636 PROGRAM beginner 836 7001 + ID=g1.t1;Parent=g1
HS04636 PROGRAM position 836 836 + Parent=g1.t1
HS04636 PROGRAM type 836 1017 + Parent=g1.t1
HS04636 ... (2 Replies)
Discussion started by: patrick87
2 Replies
8. Shell Programming and Scripting
Input:
21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11;
21 templeta ... (7 Replies)
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9. Shell Programming and Scripting
Bash scripting beginner here...
I have many folders, each folder representing one subject. Not all subjects have all the required files, so I need to somehow cycle through all the data and then extract the data only from subjects who have no files missing. I tried to output the ls command, but... (4 Replies)
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10. Shell Programming and Scripting
data.txt has several information like the below..
<SERVER>:WEB:MYDOM01:/tmp/cong/MYDOM01,/tmp/app/MYDOM01
<WEBER>:CANES:https-web01,https-web02:/web/apps/https-web01/config
<SERVER>:WEB:MYDOM07:/tmp/cong/MYDOM07,/tmp/app/MYDOM07... (7 Replies)
Discussion started by: mohtashims
7 Replies
LEARN ABOUT DEBIAN
oggz-rip
oggz-rip(1) General Commands Manual oggz-rip(1)
NAME
oggz-rip -- Extract one or more logical bitstreams from an Ogg file.
SYNOPSIS
oggz-rip [-o filename | --output filename ] filename
oggz-rip [-h | --help ] [-v | --version ]
Description
oggz-rip extracts one or more tracks from an Ogg file. In Ogg terminology, oggz-rip extracts one or more logical bitstreams.
For example, to extract just the Vorbis audio track from any Ogg file:
oggz-rip -c vorbis input.ogx > output.ogg
This will removed any other tracks: Skeleton, Theora, image, etc. The output will be a valid Ogg Vorbis I file, suitable for use on hard-
ware players that do not support multiplexed (ie. multi-track) Ogg files. If the input file contains multiple Vorbis, the desired once can
be specified by serialno with the -s option. Use oggz-info to view the serialno of each track in a file.
Options
oggz-rip accepts the following options:
Miscellaneous options
-o filename, --output filename
Write output to the specified filename instead of printing it to standard output.
-h, --help
Display usage information and exit.
-v, --version
Output version information and exit.
Filter options
These options can be used multiple times. Pages matching ANY of the filter options will be included into the output.
-s serialno, --serialno serialno
Output streams with given serialno.
-i index, --stream-index index
Filter by stream index. These are assigned to streams in the order of their BOS pages, starting at 0.
-c content-type --content-type content-type
Filter by content-type. Run oggz-known-codecs(1) for a full list of codecs known by the installed version of oggz.
EXAMPLES
Extract all bitstreams from file.ogg:
oggz rip -o output.ogg file.ogg
Extract only the Theora bitstream from file.ogv:
oggz rip -c theora -o output.ogv file.ogv
AUTHOR
David Kuehling January 1, 2005;
COPYRIGHT
Copyright (C) 2005 CSIRO Australia
SEE ALSO
oggz-merge(1), oggz-chop(1), oggz-dump(1), oggz-diff(1) hogg(1)
oggz-rip(1)