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Shell Programming and Scripting
Extract all the content after a specific data
Post 302367252 by ghostdog74 on Monday 2nd of November 2009 03:43:36 AM
11-02-2009
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1. Shell Programming and Scripting
Hi,
I got a long list of contents:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Discussion started by: patrick87
2 Replies
2. Shell Programming and Scripting
My input file:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF
SDGFDGSFDGSGSDGSDGSDGSDGSDG
My... (22 Replies)
Discussion started by: patrick87
22 Replies
3. Shell Programming and Scripting
My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
Data Direction Start_time End_time Length
1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
11 Replies
4. Shell Programming and Scripting
Input file:
#abc_1
SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS
Output file:
FASFGGDSGDS
I just want to print out the read from position 5 until position 15 from the data.
Below is the code that I just try but it is failed to get my desired output:
grep -v '#' input_file | awk... (5 Replies)
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5. Shell Programming and Scripting
Input file:
>position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344
MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA
ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA
NRTS*
>position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
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6. Shell Programming and Scripting
Input file 1:
>pattern_5
GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF
ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT
SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW
>pattern_1
AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
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7. Shell Programming and Scripting
Input:
HS04636 PROGRAM source 836 7001 + ID=g1
HS04636 PROGRAM beginner 836 7001 + ID=g1.t1;Parent=g1
HS04636 PROGRAM position 836 836 + Parent=g1.t1
HS04636 PROGRAM type 836 1017 + Parent=g1.t1
HS04636 ... (2 Replies)
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8. Shell Programming and Scripting
Input:
21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11;
21 templeta ... (7 Replies)
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9. Shell Programming and Scripting
Bash scripting beginner here...
I have many folders, each folder representing one subject. Not all subjects have all the required files, so I need to somehow cycle through all the data and then extract the data only from subjects who have no files missing. I tried to output the ls command, but... (4 Replies)
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10. Shell Programming and Scripting
data.txt has several information like the below..
<SERVER>:WEB:MYDOM01:/tmp/cong/MYDOM01,/tmp/app/MYDOM01
<WEBER>:CANES:https-web01,https-web02:/web/apps/https-web01/config
<SERVER>:WEB:MYDOM07:/tmp/cong/MYDOM07,/tmp/app/MYDOM07... (7 Replies)
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LEARN ABOUT OSX
platform::shell
platform::shell(n) Tcl Bundled Packages platform::shell(n) __________________________________________________________________________________________________________________________________________________ NAME
platform::shell - System identification support code and utilities SYNOPSIS
package require platform::shell ?1.1.4? platform::shell::generic shell platform::shell::identify shell platform::shell::platform shell _________________________________________________________________ DESCRIPTION
The platform::shell package provides several utility commands useful for the identification of the architecture of a specific Tcl shell. This package allows the identification of the architecture of a specific Tcl shell different from the shell running the package. The only requirement is that the other shell (identified by its path), is actually executable on the current machine. While for most platform this means that the architecture of the interrogated shell is identical to the architecture of the running shell this is not generally true. A counter example are all platforms which have 32 and 64 bit variants and where a 64bit system is able to run 32bit code. For these running and interrogated shell may have different 32/64 bit settings and thus different identifiers. For applications like a code repository it is important to identify the architecture of the shell which will actually run the installed packages, versus the architecture of the shell running the repository software. COMMANDS
platform::shell::identify shell This command does the same identification as platform::identify, for the specified Tcl shell, in contrast to the running shell. platform::shell::generic shell This command does the same identification as platform::generic, for the specified Tcl shell, in contrast to the running shell. platform::shell::platform shell This command returns the contents of tcl_platform(platform) for the specified Tcl shell. KEYWORDS
operating system, cpu architecture, platform, architecture platform::shell 1.1.4 platform::shell(n)