Input file data contents:
Output file 1 contents:
Output file 2 contents:
If I have a long list data inside a file, how I can divide the data into different file?
I need three data inside each file.
For example, my data source got 300 sequence.
I need it to divide 3 sequence in a file. Total desired output are 100 files that content 3 sequence each.
Do anybody got idea to solve my trouble?
Thanks a lot for all of your guide.
Last edited by pludi; 10-30-2009 at 05:51 AM..
Reason: code tags, please...
Below is my perl script:
#!/usr/bin/perl
open(FILE,"$ARGV") or die "$!";
@DATA = <FILE>;
close FILE;
$join = join("",@DATA);
@array = split( ">",$join);
for($i=0;$i<=scalar(@array);$i++){
system ("/home/bin/./program_name_count_length MULTI_sequence_DATA_FILE -d... (5 Replies)
Hello Everyone,
I have a perl script that reads two types of data files (txt and XML). These data files are huge and large in number. I am using something like this :
foreach my $t (@text)
{
open TEXT, $t or die "Cannot open $t for reading: $!\n";
while(my $line=<TEXT>){
... (4 Replies)
I’m new to Linux script and not sure how to filter out bad records from huge flat files (over 1.3GB each). The delimiter is a semi colon “;”
Here is the sample of 5 lines in the file:
Name1;phone1;address1;city1;state1;zipcode1
Name2;phone2;address2;city2;state2;zipcode2;comment... (7 Replies)
into small files. i need to add a head.txt and tail.txt into small files at the begin and end, and give a name as q1.xml q2.xml q3.xml ....
thank you very much. (2 Replies)
Hi All,
I have file(File1) with data like below:
102100|LName|Gender|Company|Branch|Bday|Salary|Age
102100|bbbb|male|cccc|dddd|19900814|15000|20|
102101|asdg|male|gggg|ksgu|19911216|||
102102|bdbm|male|kkkk|acke|19931018||23|
102102|kfjg|male|kkkc|gkgg|19921213|14000|24|... (2 Replies)
Hi,
I have a Huge 7 GB file which has around 1 million records, i want to split this file into 4 files to contain around 250k messages each.
Please help me as Split command cannot work here as it might miss tags..
Format of the file is as below
<!--###### ###### START-->... (6 Replies)
We have a folder XYZ with large number of files (>350,000). how can i split the folder and create say 10 of them XYZ1 to XYZ10 with 35,000 files each. (doesnt matter which files go where). (12 Replies)
Hi Gurus,
I have below JSON file, now I want to rewrite this file into a new file.
I will appreciate if anyone can help me to provide the solution...I can't use jq.
{
"_id": "3ad893cb4cf1560add7b4caffd4b6126",
"_rev": "1-1f0ce165e1d210319cf6e9f9c6ff654f",
"name":... (4 Replies)
I have 2 large file (.dat) around 70 g, 12 columns but the data not sorted in both the files.. need your inputs in giving the best optimized method/command to achieve this and redirect the not macthing lines to the thrid file ( diff.dat)
File 1 - 15 columns
File 2 - 15 columns
Data is... (9 Replies)
Gents
I have huge NAS File System as /sys with size 10 TB and I want to Split each 1TB in spirit File System to be mounted in the server.
How to can I do that without changing anything in the source.
Please your support. (1 Reply)
Discussion started by: AbuAliiiiiiiiii
1 Replies
LEARN ABOUT DEBIAN
bio::variation::snp
Bio::Variation::SNP(3pm) User Contributed Perl Documentation Bio::Variation::SNP(3pm)NAME
Bio::Variation::SNP - submitted SNP
SYNOPSIS
$SNP = Bio::Variation::SNP->new ();
DESCRIPTION
Inherits from Bio::Variation::SeqDiff and Bio::Variation::Allele, with additional methods that are (db)SNP specific (ie, refSNP/subSNP IDs,
batch IDs, validation methods).
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Allen Day <allenday@ucla.edu>
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
get/set-able methods
Usage : $is = $snp->method()
Function: for getting/setting attributes
Returns : a value. probably a scalar.
Args : if you're trying to set an attribute, pass in the new value.
Methods:
--------
id
type
observed
seq_5
seq_3
ncbi_build
ncbi_chr_hits
ncbi_ctg_hits
ncbi_seq_loc
ucsc_build
ucsc_chr_hits
ucsc_ctg_hits
heterozygous
heterozygous_SE
validated
genotype
handle
batch_id
method
locus_id
symbol
mrna
protein
functional_class
is_subsnp
Title : is_subsnp
Usage : $is = $snp->is_subsnp()
Function: returns 1 if $snp is a subSNP
Returns : 1 or undef
Args : NONE
subsnp
Title : subsnp
Usage : $subsnp = $snp->subsnp()
Function: returns the currently active subSNP of $snp
Returns : Bio::Variation::SNP
Args : NONE
add_subsnp
Title : add_subsnp
Usage : $subsnp = $snp->add_subsnp()
Function: pushes the previous value returned by subsnp() onto a stack,
accessible with each_subsnp().
Sets return value of subsnp() to a new Bio::Variation::SNP
object, and returns that object.
Returns : Bio::Varitiation::SNP
Args : NONE
each_subsnp
Title : each_subsnp
Usage : @subsnps = $snp->each_subsnp()
Function: returns a list of the subSNPs of a refSNP
Returns : list
Args : NONE
perl v5.14.2 2012-03-02 Bio::Variation::SNP(3pm)