10-26-2009
Hello Sdanner and Steadyonabix,
I have tried to come up with an easier way to describe what I need to do with my file. If you recall I have a file that looks like this:
ID 1 2 3 4 5 6 7 8
83845676 0 0 0 0 CC -1 CC CC
838469. -1 -1 1 GG CC 0 CC 1
83847041 -1 . 0 0 . 0 0 0
83847.4 0 -1 1 1 CC 0 0 0
83847085 0 CC 0 0 0 0 0 0
83847118 . -1 1 GG . GG CC 0
83847162 GG -1 1 0 0 0 0 0
83847165 -1 -1 . GG CC 0 GG 0
I have to get everything recoded for a specific program that only recognizes -1, 0, and 1 but the CC and GG cause an issue because they can take on multiple values. Perhaps calculating the minimum and maximum of each column may be easier (?)....
When min = -1 and max = 0, then both CC and GG = 1;
When min = 0 and max = 1, then both CC and GG = 1;
When both the min and max = 0, then CC = -1 and GG = 1;
I hope this clears things up a bit! Any help you could provide would be GREATLY appreciated!
Thanks,
Doob
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LEARN ABOUT DEBIAN
gedcom::grammar
Gedcom::Grammar(3pm) User Contributed Perl Documentation Gedcom::Grammar(3pm)
NAME
Gedcom::Grammar - a module to manipulate Gedcom grammars
Version 1.16 - 24th April 2009
SYNOPSIS
use Gedcom::Grammar;
my $st = $grammar->structure("GEDCOM");
my @sgr = $grammar->item("DATE");
my @items = $grammar->valid_items;
my $min = $grammar->min;
my $max = $grammar->max;
my @items = $grammar->items;
DESCRIPTION
A selection of subroutines to handle the grammar of a gedcom file.
Derived from Gedcom::Item.
HASH MEMBERS
Some of the more important hash members are:
$grammar->{top}
The top of the grammar tree.
$grammar->{top}{structures}
A reference to a hash mapping the names of all structures to the grammar objects.
METHODS
structures
my $st = $grammar->structure("GEDCOM");
Return the grammar item of the specified structure, if it exists, or undef.
item
my @sgr = $grammar->item("DATE");
Return a list of the possible grammar items of the specified sub-item, if it exists.
min
my $min = $grammar->min;
Return the minimum permissible number of $grammar items
max
my $max = $grammar->max;
Return the maximum permissible number of $grammar items
items
my @items = $grammar->items;
Return a list of tags of the grammar's sub-items
valid_items
my @items = $grammar->valid_items;
Return a hash detailing all the valid sub-items of the grammar item. The key is the tag of the sub-item and the value is an array of
hashes with three members:
grammar => the sub-item grammar
min => the minimum permissible number of these sub-items
max => the maximum permissible number of these sub-items
perl v5.14.2 2012-04-12 Gedcom::Grammar(3pm)