|
|
Sponsored Content
Top Forums
Shell Programming and Scripting
Filling in missing columns
Post 302362755 by gisele_l on Saturday 17th of October 2009 10:58:16 AM
10-17-2009
|
|
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
It can't be that hard, but I just can't figure it out:
I have file like:
File Sub-brick M_1 S_1 M_2 S_2 M_4 S_4 ...
xxx 1 214 731 228 621 132 578 ...
and would like to get 0 0 where M_3 S_3 is missing
xxx 1 214 731 228 621 0 0 132 578 ...
I wrote following script, but can't figure out... (3 Replies)
Discussion started by: avvk
3 Replies
2. UNIX for Dummies Questions & Answers
I have a text file that looks like the following:
rs529715 CFD
rs1550758 CIDEB
Magmas
rs12542019 CPNE1
RBM12
rs10515181 CPNE1
RBM12
rs4411112 CPT1A
Some rows have 1 column, whereas some have 2. The ones that have 2 columns have one column (1st column) that start with rs.
I need to... (6 Replies)
Discussion started by: evelibertine
6 Replies
3. UNIX for Dummies Questions & Answers
Hi,
I have a file with fixed number of columns (total 58 columns) delimeted by pipe (|). Due to a bug in the application the export file does not come with fixed number of columns. The missing data columns are being replaced by blank in the output file. In one line I can have 25 columns (33... (1 Reply)
Discussion started by: yale_work
1 Replies
4. UNIX for Dummies Questions & Answers
I have a text file that looks like the following:
5.644 39.2% 0.00 0.50 rs1695626 4 -0.003 0.21% 0.03 0.73
rs1763326 3 -0.001 0.03% 0.00 0.89
5.645 39.2% 0.00 0.50 rs770721 2 -0.002 0.07% 0.01 0.84... (7 Replies)
Discussion started by: evelibertine
7 Replies
5. UNIX for Dummies Questions & Answers
Hello all,
I have a file which is tab separated like that:
PHE_205_A TIP_127_W ARG_150_B
MET_1150_A TIP_12_W VAL_11_B
GLU_60_A TIP_130_W ARG_143_B
LEU_1033_A TIP_203_W ARG_14_B
SER_1092_A TIP_203_W
THR_1090_A TIP_203_W
SER_1092_A TIP_25_W ... (6 Replies)
Discussion started by: TheTransporter
6 Replies
6. UNIX for Dummies Questions & Answers
I have a text file which includes empty columns with missing values. I want to fill the empty columns with the character "X". How do I go about doing that? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies
7. UNIX for Dummies Questions & Answers
Hi,
I have to text files that I want to merge by the first column. The values in the first column pretty much match for the first part. However there are some values that are present in column 1 and not present in column 2 or vice versa. For such values I would like to substitute X for the... (9 Replies)
Discussion started by: evelibertine
9 Replies
8. UNIX for Dummies Questions & Answers
Hi,
I have a text file where some of the values in columns are missing:
Input:
QhFudW3dKSYL2NTQUA 1 11133999-11134048
uhIp9KxB6USIy16CEY 1 11126760-11126774
11126775-11126805
11128065-11128068
6epeZ6CTNW4Au8uXys 1 24480823-24480872
Tp3nvutucBZ13CjuXc 1 155204870-155204891... (3 Replies)
Discussion started by: evelibertine
3 Replies
9. Shell Programming and Scripting
I am learning AWK by trying out examples whenever I need a specific conversion. I would like to edit the 'before.txt' so that all the missing data points between 140-150 are added and shown as 0.
before.txt
145 2
148 13
149 17
to below,
140 0
141 0
142 0
143 0
144 0
145 2
146 0... (5 Replies)
Discussion started by: numareica
5 Replies
10. Shell Programming and Scripting
I am using awk to match columns and output based on those matches. For some reason it is not printing matching columns, am I missing something?
Operating system - windows with cygwin.
Command that I am using:
sed 's/]*,]*/,/g' $tempdir/file1 > $tempdir/file1.$$ && awk -F, 'FNR==NR{f2=$2... (7 Replies)
Discussion started by: dis0wned
7 Replies
LEARN ABOUT CENTOS
slamrg.f
slamrg.f(3) LAPACK slamrg.f(3) NAME
slamrg.f - SYNOPSIS
Functions/Subroutines subroutine slamrg (N1, N2, A, STRD1, STRD2, INDEX) SLAMRG creates a permutation list to merge the entries of two independently sorted sets into a single set sorted in ascending order. Function/Subroutine Documentation subroutine slamrg (integerN1, integerN2, real, dimension( * )A, integerSTRD1, integerSTRD2, integer, dimension( * )INDEX) SLAMRG creates a permutation list to merge the entries of two independently sorted sets into a single set sorted in ascending order. Purpose: SLAMRG will create a permutation list which will merge the elements of A (which is composed of two independently sorted sets) into a single set which is sorted in ascending order. Parameters: N1 N1 is INTEGER N2 N2 is INTEGER These arguements contain the respective lengths of the two sorted lists to be merged. A A is REAL array, dimension (N1+N2) The first N1 elements of A contain a list of numbers which are sorted in either ascending or descending order. Likewise for the final N2 elements. STRD1 STRD1 is INTEGER STRD2 STRD2 is INTEGER These are the strides to be taken through the array A. Allowable strides are 1 and -1. They indicate whether a subset of A is sorted in ascending (STRDx = 1) or descending (STRDx = -1) order. INDEX INDEX is INTEGER array, dimension (N1+N2) On exit this array will contain a permutation such that if B( I ) = A( INDEX( I ) ) for I=1,N1+N2, then B will be sorted in ascending order. Author: Univ. of Tennessee Univ. of California Berkeley Univ. of Colorado Denver NAG Ltd. Date: September 2012 Definition at line 100 of file slamrg.f. Author Generated automatically by Doxygen for LAPACK from the source code. Version 3.4.2 Tue Sep 25 2012 slamrg.f(3)