Sponsored Content
Top Forums Shell Programming and Scripting Extract specific content from a file Post 302359963 by patrick87 on Wednesday 7th of October 2009 08:49:14 PM
Old 10-07-2009
Hi thegeek,
Thanks for your suggestion. It is worked nice.
Can you roughly explain about the reason that you write the code?!
Code:
sed -n -e '/>sequence_3/q' -e '/>sequence_2/,/>sequence_3/p' t1

For example, if I got long list of contents and I only want to extract specific contents based on the interested header, can I use the sed code that you recommend as well?

Quote:
Originally Posted by thegeek
Code:
sed -n -e '/>sequence_3/q' -e '/>sequence_2/,/>sequence_3/p' t1

Put your input & output in code tags for better visibility.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Shell script or command help to extract specific contents from a long list of content

Hi, I got a long list of contents: >sequence_1 ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC ASDSFDFFDFDFFWERERERERFSDFESFSFD >sequence_2 ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS >sequence_3 VEDFGSDGSDGSDGSDGSDGSDGSDG dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Discussion started by: patrick87
2 Replies

2. Shell Programming and Scripting

Extract all the content after a specific data

My input: >seq_1 DSASSTRRARRRRTPRTPSLRSRRSDVTCS >seq_3 RMRLRRWRKSCSERS*RRSN >seq_8 RTTGLSERPRLPTTASRSISSRWTR >seq_10 NELPLEKGSLDSISIE >seq_9 PNQGDAREPQAHLPRRQGPRDRPLQAYA+ QVQHRRHDHSRTQH*LCRRRQREDCDRLHR >seq_4 DRGKGQAGCRRPQEGEALVRRCS>seq_6 FA*GLAAQDGEA*SGRG My output: Extract all... (22 Replies)
Discussion started by: patrick87
22 Replies

3. Shell Programming and Scripting

Extract specific data content from a long list of data

My input: Data name: ABC001 Data length: 1000 Detail info Data Direction Start_time End_time Length 1 forward 10 100 90 1 forward 15 200 185 2 reverse 50 500 450 Data name: XFG110 Data length: 100 Detail info Data Direction Start_time End_time Length 1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
11 Replies

4. Shell Programming and Scripting

Way to extract detail and its content above specific value problem asking

Input file: >position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344 MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA NRTS* >position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
Discussion started by: patrick87
7 Replies

5. Shell Programming and Scripting

Extract specific content from data and rename its header problem asking

Input file 1: >pattern_5 GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW >pattern_1 AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
Discussion started by: patrick87
10 Replies

6. Shell Programming and Scripting

Extract all content that match exactly only specific word

Input: 21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set; 21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11; 21 templeta ... (7 Replies)
Discussion started by: patrick87
7 Replies

7. Shell Programming and Scripting

perl extract content of file

I'm using Mail::Internet module, which will basically filter through email content and extract the body of the message my perl script to extract the body of the email #!/usr/bin/perl -w use Mail::Internet; @lines = <STDIN>; $mi_obj = new Mail::Internet(); ... (2 Replies)
Discussion started by: amlife
2 Replies

8. Shell Programming and Scripting

Extract Content from a file

I have an input file with contents like: ./prbru6/12030613.LOG:24514|APPL|prbru6.8269.RTUDaemon.1|?|13:49:56|12/03/06|GMT+3|?|RTUServer Error:Count of Internal Error Qty (-1) < 0, for Audit group id - 1L5XVJ6DQE36AXL, after record number,1, File: EventAuditor.cc, Line: 394|? ... (5 Replies)
Discussion started by: rkrish
5 Replies

9. Shell Programming and Scripting

Extract specific line in an html file starting and ending with specific pattern to a text file

Hi This is my first post and I'm just a beginner. So please be nice to me. I have a couple of html files where a pattern beginning with "http://www.site.com" and ending with "/resource.dat" is present on every 241st line. How do I extract this to a new text file? I have tried sed -n 241,241p... (13 Replies)
Discussion started by: dejavo
13 Replies

10. Solaris

Extract content of .dump file

We have been provided a .dump file.The need is to extract the contents(may includes files and folder). ls -lZ didnt help me as Z is not a valid option. How to extract the file contents ? (7 Replies)
Discussion started by: vinil
7 Replies
ERR_GET_LIB(3)							      OpenSSL							    ERR_GET_LIB(3)

NAME
ERR_GET_LIB, ERR_GET_FUNC, ERR_GET_REASON - get library, function and reason code SYNOPSIS
#include <openssl/err.h> int ERR_GET_LIB(unsigned long e); int ERR_GET_FUNC(unsigned long e); int ERR_GET_REASON(unsigned long e); DESCRIPTION
The error code returned by ERR_get_error() consists of a library number, function code and reason code. ERR_GET_LIB(), ERR_GET_FUNC() and ERR_GET_REASON() can be used to extract these. The library number and function code describe where the error occurred, the reason code is the information about what went wrong. Each sub-library of OpenSSL has a unique library number; function and reason codes are unique within each sub-library. Note that different libraries may use the same value to signal different functions and reasons. ERR_R_... reason codes such as ERR_R_MALLOC_FAILURE are globally unique. However, when checking for sub-library specific reason codes, be sure to also compare the library number. ERR_GET_LIB(), ERR_GET_FUNC() and ERR_GET_REASON() are macros. RETURN VALUES
The library number, function code and reason code respectively. SEE ALSO
err(3), ERR_get_error(3) HISTORY
ERR_GET_LIB(), ERR_GET_FUNC() and ERR_GET_REASON() are available in all versions of SSLeay and OpenSSL. 0.9.7a 2000-01-31 ERR_GET_LIB(3)
All times are GMT -4. The time now is 05:53 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy