Sponsored Content
Top Forums Shell Programming and Scripting Extract specific content from a file Post 302359673 by radoulov on Wednesday 7th of October 2009 06:54:09 AM
Old 10-07-2009
Use gawk, nawk or /usr/xpg4/bin/awk on Solaris:

Code:
awk 'END { if (r ~ p) print r }
/^>sequence/ { if (r ~ p) print r; r = x }
{ r = (r ? r RS : x) $0 }
' p="sequence_2" infile



---------- Post updated at 12:47 PM ---------- Previous update was at 12:41 PM ----------

Yes,
thegeek's sed approach should be faster.
Assuming progressive sequence numbers with fixed format,
you could add parameters:

Code:
start="sequence_2"
stop="$(( ${start##*_} + 1 ))"

sed -n "
  /$stop/q
  /$start/,/$stop/p
  " infile



---------- Post updated at 12:51 PM ---------- Previous update was at 12:47 PM ----------

A similar approach with awk:
Code:
awk '$0 ~ stop { exit }
  $0 ~ start, $0 ~ stop {
    if ($0 !~ stop) print 
    }' start="sequence_2" \
stop="$(( ${start##*_} + 1 ))" infile



---------- Post updated at 12:54 PM ---------- Previous update was at 12:51 PM ----------

Notice that the sed and the second awk versions assume an input in numeric (by sequence number) order just like the example in the original post.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Shell script or command help to extract specific contents from a long list of content

Hi, I got a long list of contents: >sequence_1 ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC ASDSFDFFDFDFFWERERERERFSDFESFSFD >sequence_2 ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS >sequence_3 VEDFGSDGSDGSDGSDGSDGSDGSDG dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Discussion started by: patrick87
2 Replies

2. Shell Programming and Scripting

Extract all the content after a specific data

My input: >seq_1 DSASSTRRARRRRTPRTPSLRSRRSDVTCS >seq_3 RMRLRRWRKSCSERS*RRSN >seq_8 RTTGLSERPRLPTTASRSISSRWTR >seq_10 NELPLEKGSLDSISIE >seq_9 PNQGDAREPQAHLPRRQGPRDRPLQAYA+ QVQHRRHDHSRTQH*LCRRRQREDCDRLHR >seq_4 DRGKGQAGCRRPQEGEALVRRCS>seq_6 FA*GLAAQDGEA*SGRG My output: Extract all... (22 Replies)
Discussion started by: patrick87
22 Replies

3. Shell Programming and Scripting

Extract specific data content from a long list of data

My input: Data name: ABC001 Data length: 1000 Detail info Data Direction Start_time End_time Length 1 forward 10 100 90 1 forward 15 200 185 2 reverse 50 500 450 Data name: XFG110 Data length: 100 Detail info Data Direction Start_time End_time Length 1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
11 Replies

4. Shell Programming and Scripting

Way to extract detail and its content above specific value problem asking

Input file: >position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344 MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA NRTS* >position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
Discussion started by: patrick87
7 Replies

5. Shell Programming and Scripting

Extract specific content from data and rename its header problem asking

Input file 1: >pattern_5 GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW >pattern_1 AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
Discussion started by: patrick87
10 Replies

6. Shell Programming and Scripting

Extract all content that match exactly only specific word

Input: 21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set; 21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11; 21 templeta ... (7 Replies)
Discussion started by: patrick87
7 Replies

7. Shell Programming and Scripting

perl extract content of file

I'm using Mail::Internet module, which will basically filter through email content and extract the body of the message my perl script to extract the body of the email #!/usr/bin/perl -w use Mail::Internet; @lines = <STDIN>; $mi_obj = new Mail::Internet(); ... (2 Replies)
Discussion started by: amlife
2 Replies

8. Shell Programming and Scripting

Extract Content from a file

I have an input file with contents like: ./prbru6/12030613.LOG:24514|APPL|prbru6.8269.RTUDaemon.1|?|13:49:56|12/03/06|GMT+3|?|RTUServer Error:Count of Internal Error Qty (-1) < 0, for Audit group id - 1L5XVJ6DQE36AXL, after record number,1, File: EventAuditor.cc, Line: 394|? ... (5 Replies)
Discussion started by: rkrish
5 Replies

9. Shell Programming and Scripting

Extract specific line in an html file starting and ending with specific pattern to a text file

Hi This is my first post and I'm just a beginner. So please be nice to me. I have a couple of html files where a pattern beginning with "http://www.site.com" and ending with "/resource.dat" is present on every 241st line. How do I extract this to a new text file? I have tried sed -n 241,241p... (13 Replies)
Discussion started by: dejavo
13 Replies

10. Solaris

Extract content of .dump file

We have been provided a .dump file.The need is to extract the contents(may includes files and folder). ls -lZ didnt help me as Z is not a valid option. How to extract the file contents ? (7 Replies)
Discussion started by: vinil
7 Replies
ncakmod(1)							   User Commands							ncakmod(1)

NAME
ncakmod - start or stop the NCA kernel module SYNOPSIS
/etc/init.d/ncakmod start | stop DESCRIPTION
ncakmod is used to start or stop the Solaris Network Cache and Accelerator ("NCA") kernel module. When the start option is specified at the command-line, the NCA kernel module will be activated for all physical interfaces listed in the nca.if file. When the ncakmod command is invoked with the stop option, the NCA kernel module will print the following message: To stop NCA, please set the status configuration parameter to disable in ncakmod.conf and then reboot your system. See the ncakmod.conf(4) manual page for more information. Note that in order to properly stop NCA on your system, you must first edit the ncakmod.conf(4) file and set the status field to "disable," then reboot your system. OPTIONS
start Starts the NCA kernel module. stop Describes the current method for stopping the NCA feature. EXAMPLES
Example 1: Starting and Stopping the NCA Feature The following command is used to start the NCA feature: example% /etc/init.d/ncakmod start FILES
/etc/init.d/ncakmod The NCA kernel module startup script. /etc/nca/ncakmod.conf Specifies configuration options for the NCA kernel module. ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +-----------------------------+-----------------------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +-----------------------------+-----------------------------+ |Availability |SUNWncar | +-----------------------------+-----------------------------+ |Interface Stability |Evolving | +-----------------------------+-----------------------------+ SEE ALSO
nca(1), ncab2clf(1), ncad_addr(4), nca.if(4), ncakmod.conf(4), ncalogd.conf(4), attributes(5) SunOS 5.10 28 Sep 2001 ncakmod(1)
All times are GMT -4. The time now is 07:56 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy