Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: Extract specific content from a file
Top Forums Shell Programming and Scripting Extract specific content from a file Post 302359665 by patrick87 on Wednesday 7th of October 2009 06:31:06 AM
Old 10-07-2009
Extract specific content from a file
My input file:
Code:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF
SDGFDGSFDGSGSDGSDGSDGSDGSDG

My desired output file:
Code:
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS

I only want to extract the header of sequence_2 and its content.
Do anybody got idea how to do it?
Will awk response faster if got a long list of contents?
Thanks for all of your suggestion Smilie
Last edited by radoulov; 10-07-2009 at 07:55 AM.. Reason: Use code tags, please!
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Shell script or command help to extract specific contents from a long list of content

Hi, I got a long list of contents: >sequence_1 ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC ASDSFDFFDFDFFWERERERERFSDFESFSFD >sequence_2 ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS >sequence_3 VEDFGSDGSDGSDGSDGSDGSDGSDG dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Discussion started by: patrick87
2 Replies

2. Shell Programming and Scripting

Extract all the content after a specific data

My input: >seq_1 DSASSTRRARRRRTPRTPSLRSRRSDVTCS >seq_3 RMRLRRWRKSCSERS*RRSN >seq_8 RTTGLSERPRLPTTASRSISSRWTR >seq_10 NELPLEKGSLDSISIE >seq_9 PNQGDAREPQAHLPRRQGPRDRPLQAYA+ QVQHRRHDHSRTQH*LCRRRQREDCDRLHR >seq_4 DRGKGQAGCRRPQEGEALVRRCS>seq_6 FA*GLAAQDGEA*SGRG My output: Extract all... (22 Replies)
Discussion started by: patrick87
22 Replies

3. Shell Programming and Scripting

Extract specific data content from a long list of data

My input: Data name: ABC001 Data length: 1000 Detail info Data Direction Start_time End_time Length 1 forward 10 100 90 1 forward 15 200 185 2 reverse 50 500 450 Data name: XFG110 Data length: 100 Detail info Data Direction Start_time End_time Length 1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
11 Replies

4. Shell Programming and Scripting

Way to extract detail and its content above specific value problem asking

Input file: >position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344 MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA NRTS* >position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
Discussion started by: patrick87
7 Replies

5. Shell Programming and Scripting

Extract specific content from data and rename its header problem asking

Input file 1: >pattern_5 GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW >pattern_1 AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
Discussion started by: patrick87
10 Replies

6. Shell Programming and Scripting

Extract all content that match exactly only specific word

Input: 21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set; 21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11; 21 templeta ... (7 Replies)
Discussion started by: patrick87
7 Replies

7. Shell Programming and Scripting

perl extract content of file

I'm using Mail::Internet module, which will basically filter through email content and extract the body of the message my perl script to extract the body of the email #!/usr/bin/perl -w use Mail::Internet; @lines = <STDIN>; $mi_obj = new Mail::Internet(); ... (2 Replies)
Discussion started by: amlife
2 Replies

8. Shell Programming and Scripting

Extract Content from a file

I have an input file with contents like: ./prbru6/12030613.LOG:24514|APPL|prbru6.8269.RTUDaemon.1|?|13:49:56|12/03/06|GMT+3|?|RTUServer Error:Count of Internal Error Qty (-1) < 0, for Audit group id - 1L5XVJ6DQE36AXL, after record number,1, File: EventAuditor.cc, Line: 394|? ... (5 Replies)
Discussion started by: rkrish
5 Replies

9. Shell Programming and Scripting

Extract specific line in an html file starting and ending with specific pattern to a text file

Hi This is my first post and I'm just a beginner. So please be nice to me. I have a couple of html files where a pattern beginning with "http://www.site.com" and ending with "/resource.dat" is present on every 241st line. How do I extract this to a new text file? I have tried sed -n 241,241p... (13 Replies)
Discussion started by: dejavo
13 Replies

10. Solaris

Extract content of .dump file

We have been provided a .dump file.The need is to extract the contents(may includes files and folder). ls -lZ didnt help me as Z is not a valid option. How to extract the file contents ? (7 Replies)
Discussion started by: vinil
7 Replies

LEARN ABOUT DEBIAN

sdl::gfx::imagefilter

pods::SDL::GFX::ImageFilter(3pm)			User Contributed Perl Documentation			  pods::SDL::GFX::ImageFilter(3pm)

NAME

       SDL::GFX::ImageFilter - image filtering functions

CATEGORY

       TODO, GFX

METHODS

   MMX_detect
       int gfx_image_MMX_detect()      CODE:	       SDL_imageFilterMMXdetect();

   MMX_off
       void gfx_image_MMX_off()      CODE:	     SDL_imageFilterMMXoff();

   MMX_on
       void gfx_image_MMX_on()	    CODE:	    SDL_imageFilterMMXon();

   add
       int gfx_image_add(Src1, Src2, Dest, length)	unsigned char *Src1	 unsigned char *Src2	  unsigned char *Dest	   int length
	    CODE:	    RETVAL = SDL_imageFilterAdd(Src1, Src2, Dest, length);	OUTPUT: 	  RETVAL

   mean
       int gfx_image_mean(Src1, Src2, Dest, length)	 unsigned char *Src1	  unsigned char *Src2	   unsigned char *Dest	    int length
	    CODE:	    RETVAL = SDL_imageFilterMean(Src1, Src2, Dest, length);	 OUTPUT:	   RETVAL

   sub
       int gfx_image_sub(Src1, Src2, Dest, length)	unsigned char *Src1	 unsigned char *Src2	  unsigned char *Dest	   int length
	    CODE:	    RETVAL = SDL_imageFilterSub(Src1, Src2, Dest, length);	OUTPUT: 	  RETVAL

   abs_diff
       int gfx_image_abs_diff(Src1, Src2, Dest, length)      unsigned char *Src1      unsigned char *Src2      unsigned char *Dest	int length
	    CODE:	    RETVAL = SDL_imageFilterAbsDiff(Src1, Src2, Dest, length);	    OUTPUT:	      RETVAL

   mult
       int gfx_image_mult(Src1, Src2, Dest, length)	 unsigned char *Src1	  unsigned char *Src2	   unsigned char *Dest	    int length
	    CODE:	    RETVAL = SDL_imageFilterMult(Src1, Src2, Dest, length);	 OUTPUT:	   RETVAL

   mult_nor
       int gfx_image_mult_nor(Src1, Src2, Dest, length)      unsigned char *Src1      unsigned char *Src2      unsigned char *Dest	int length
	    CODE:	    RETVAL = SDL_imageFilterMultNor(Src1, Src2, Dest, length);	    OUTPUT:	      RETVAL

   mult_div_by_2
       int gfx_image_mult_div_by_2(Src1, Src2, Dest, length)	  unsigned char *Src1	   unsigned char *Src2	    unsigned char *Dest      int
       length	   CODE:	   RETVAL = SDL_imageFilterMultDivby2(Src1, Src2, Dest, length);      OUTPUT:		RETVAL

   mult_div_by_4
       int gfx_image_mult_div_by_4(Src1, Src2, Dest, length)	  unsigned char *Src1	   unsigned char *Src2	    unsigned char *Dest      int
       length	   CODE:	   RETVAL = SDL_imageFilterMultDivby4(Src1, Src2, Dest, length);      OUTPUT:		RETVAL

   bit_and
       int gfx_image_bit_and(Src1, Src2, Dest, length)	    unsigned char *Src1      unsigned char *Src2      unsigned char *Dest      int length
	    CODE:	    RETVAL = SDL_imageFilterBitAnd(Src1, Src2, Dest, length);	   OUTPUT:	     RETVAL

   bit_or
       int gfx_image_bit_or(Src1, Src2, Dest, length)	   unsigned char *Src1	    unsigned char *Src2      unsigned char *Dest      int length
	    CODE:	    RETVAL = SDL_imageFilterBitOr(Src1, Src2, Dest, length);	  OUTPUT:	    RETVAL

   div
       int gfx_image_div(Src1, Src2, Dest, length)	unsigned char *Src1	 unsigned char *Src2	  unsigned char *Dest	   int length
	    CODE:	    RETVAL = SDL_imageFilterDiv(Src1, Src2, Dest, length);	OUTPUT: 	  RETVAL

   bit_negation
       int gfx_image_bit_negation(Src1, Dest, length)	   unsigned char *Src1	    unsigned char *Dest      int length      CODE:
		 RETVAL = SDL_imageFilterBitNegation(Src1, Dest, length);      OUTPUT:		 RETVAL

   add_byte
       int gfx_image_add_byte(Src1, Dest, length, C)	  unsigned char *Src1	   unsigned char *Dest	    int length	    unsigned char C
	    CODE:	    RETVAL = SDL_imageFilterAddByte(Src1, Dest, length, C);	 OUTPUT:	   RETVAL

   add_uint
       int gfx_image_add_uint(Src1, Dest, length, C)	  unsigned char *Src1	   unsigned char *Dest	    int length	    unsigned int C
	    CODE:	    RETVAL = SDL_imageFilterAddUint(Src1, Dest, length, C);	 OUTPUT:	   RETVAL

   add_byte_to_half
       int gfx_image_add_byte_to_half(Src1, Dest, length, C)	  unsigned char *Src1	   unsigned char *Dest	    int length	    unsigned char
       C      CODE:	      RETVAL = SDL_imageFilterAddByteToHalf(Src1, Dest, length, C);	 OUTPUT:	   RETVAL

   sub_byte
       int gfx_image_sub_byte(Src1, Dest, length, C)	  unsigned char *Src1	   unsigned char *Dest	    int length	    unsigned char C
	    CODE:	    RETVAL = SDL_imageFilterSubByte(Src1, Dest, length, C);	 OUTPUT:	   RETVAL

   sub_uint
       int gfx_image_sub_uint(Src1, Dest, length, C)	  unsigned char *Src1	   unsigned char *Dest	    int length	    unsigned int C
	    CODE:	    RETVAL = SDL_imageFilterSubUint(Src1, Dest, length, C);	 OUTPUT:	   RETVAL

   shift_right
       int gfx_image_shift_right(Src1, Dest, length, N)      unsigned char *Src1      unsigned char *Dest      int length      unsigned char N
	    CODE:	    RETVAL = SDL_imageFilterShiftRight(Src1, Dest, length, N);	    OUTPUT:	      RETVAL

   shift_right_uint
       int gfx_image_shift_right_uint(Src1, Dest, length, N)	  unsigned char *Src1	   unsigned char *Dest	    int length	    unsigned char
       N      CODE:	      RETVAL = SDL_imageFilterShiftRightUint(Src1, Dest, length, N);	  OUTPUT:	    RETVAL

   mult_by_byte
       int gfx_image_mult_by_byte(Src1, Dest, length, C)      unsigned char *Src1      unsigned char *Dest	int length	unsigned char C
	    CODE:	    RETVAL = SDL_imageFilterMultByByte(Src1, Dest, length, C);	    OUTPUT:	      RETVAL

   shift_right_and_mult_by_byte
       int gfx_image_shift_right_and_mult_by_byte(Src1, Dest, length, N, C)	 unsigned char *Src1	  unsigned char *Dest	   int length
	    unsigned char N	 unsigned char C      CODE:	      RETVAL = SDL_imageFilterShiftRightAndMultByByte(Src1, Dest, length, N, C);
	    OUTPUT:	      RETVAL

   shift_left_byte
       int gfx_image_shift_left_byte(Src1, Dest, length, N)	 unsigned char *Src1	  unsigned char *Dest	   int length	   unsigned char N
	    CODE:	    RETVAL = SDL_imageFilterShiftLeftByte(Src1, Dest, length, N);      OUTPUT:		 RETVAL

   shift_left_uint
       int gfx_image_shift_left_uint(Src1, Dest, length, N)	 unsigned char *Src1	  unsigned char *Dest	   int length	   unsigned char N
	    CODE:	    RETVAL = SDL_imageFilterShiftLeftUint(Src1, Dest, length, N);      OUTPUT:		 RETVAL

   shift_left
       int gfx_image_shift_left(Src1, Dest, length, N)	    unsigned char *Src1      unsigned char *Dest      int length      unsigned char N
	    CODE:	    RETVAL = SDL_imageFilterShiftLeft(Src1, Dest, length, N);	   OUTPUT:	     RETVAL

   binarize_using_threshold
       int gfx_image_binarize_using_threshold(Src1, Dest, length, T)	  unsigned char *Src1	   unsigned char *Dest	    int length
	    unsigned char T	 CODE:		 RETVAL = SDL_imageFilterBinarizeUsingThreshold(Src1, Dest, length, T);      OUTPUT:
		 RETVAL

   clip_to_range
       int gfx_image_clip_to_range(Src1, Dest, length, Tmin, Tmax)	unsigned char *Src1	 unsigned char *Dest	  int length	  unsigned
       char Tmin      unsigned char Tmax      CODE:	      RETVAL = SDL_imageFilterClipToRange(Src1, Dest, length, Tmin, Tmax);	OUTPUT:
		 RETVAL

   normalize_linear
       int gfx_image_normalize_linear(Src1, Dest, length, Cmin, Cmax, Nmin, Nmax)      unsigned char *Src1	unsigned char *Dest	 int
       length	   int Cmin	 int Cmax      int Nmin      int Nmax	   CODE:	   RETVAL = SDL_imageFilterNormalizeLinear(Src1, Dest,
       length, Cmin, Cmax, Nmin, Nmax);      OUTPUT:	       RETVAL

   convolve_kernel_3x3_divide
       int gfx_image_convolve_kernel_3x3_divide(Src, Dest, rows, columns, Kernel, Divisor)	unsigned char *Src	unsigned char *Dest
	    int rows	  int columns	   Sint16 *Kernel      unsigned char Divisor	  CODE: 	  RETVAL =
       SDL_imageFilterConvolveKernel3x3Divide(Src, Dest, rows, columns, Kernel, Divisor);      OUTPUT:		 RETVAL

   convolve_kernel_5x5_divide
       int gfx_image_convolve_kernel_5x5_divide(Src, Dest, rows, columns, Kernel, Divisor)	unsigned char *Src	unsigned char *Dest
	    int rows	  int columns	   Sint16 *Kernel      unsigned char Divisor	  CODE: 	  RETVAL =
       SDL_imageFilterConvolveKernel5x5Divide(Src, Dest, rows, columns, Kernel, Divisor);      OUTPUT:		 RETVAL

   convolve_kernel_7x7_divide
       int gfx_image_convolve_kernel_7x7_divide(Src, Dest, rows, columns, Kernel, Divisor)	unsigned char *Src	unsigned char *Dest
	    int rows	  int columns	   Sint16 *Kernel      unsigned char Divisor	  CODE: 	  RETVAL =
       SDL_imageFilterConvolveKernel7x7Divide(Src, Dest, rows, columns, Kernel, Divisor);      OUTPUT:		 RETVAL

   convolve_kernel_9x9_divide
       int gfx_image_convolve_kernel_9x9_divide(Src, Dest, rows, columns, Kernel, Divisor)	unsigned char *Src	unsigned char *Dest
	    int rows	  int columns	   Sint16 *Kernel      unsigned char Divisor	  CODE: 	  RETVAL =
       SDL_imageFilterConvolveKernel9x9Divide(Src, Dest, rows, columns, Kernel, Divisor);      OUTPUT:		 RETVAL

   convolve_kernel_3x3_shift_right
       int gfx_image_convolve_kernel_3x3_shift_right(Src, Dest, rows, columns, Kernel, NRightShift)	 unsigned char *Src	 unsigned char
       *Dest	  int rows	int columns	 Sint16 *Kernel      unsigned char NRightShift	    CODE:	    RETVAL =
       SDL_imageFilterConvolveKernel3x3ShiftRight(Src, Dest, rows, columns, Kernel, NRightShift);      OUTPUT:		 RETVAL

   convolve_kernel_5x5_shift_right
       int gfx_image_convolve_kernel_5x5_shift_right(Src, Dest, rows, columns, Kernel, NRightShift)	 unsigned char *Src	 unsigned char
       *Dest	  int rows	int columns	 Sint16 *Kernel      unsigned char NRightShift	    CODE:	    RETVAL =
       SDL_imageFilterConvolveKernel5x5ShiftRight(Src, Dest, rows, columns, Kernel, NRightShift);      OUTPUT:		 RETVAL

   convolve_kernel_7x7_shift_right
       int gfx_image_convolve_kernel_7x7_shift_right(Src, Dest, rows, columns, Kernel, NRightShift)	 unsigned char *Src	 unsigned char
       *Dest	  int rows	int columns	 Sint16 *Kernel      unsigned char NRightShift	    CODE:	    RETVAL =
       SDL_imageFilterConvolveKernel7x7ShiftRight(Src, Dest, rows, columns, Kernel, NRightShift);      OUTPUT:		 RETVAL

   convolve_kernel_9x9_shift_right
       int gfx_image_convolve_kernel_9x9_shift_right(Src, Dest, rows, columns, Kernel, NRightShift)	 unsigned char *Src	 unsigned char
       *Dest	  int rows	int columns	 Sint16 *Kernel      unsigned char NRightShift	    CODE:	    RETVAL =
       SDL_imageFilterConvolveKernel9x9ShiftRight(Src, Dest, rows, columns, Kernel, NRightShift);      OUTPUT:		 RETVAL

   sobel_x
       int gfx_image_sobel_x(Src, Dest, rows, columns)	    unsigned char *Src	    unsigned char *Dest      int rows	   int columns	    CODE:
		 RETVAL = SDL_imageFilterSobelX(Src, Dest, rows, columns);	OUTPUT: 	  RETVAL

   sobel_x_shift_right
       int gfx_image_sobel_x_shift_right(Src, Dest, rows, columns, NRightShift)      unsigned char *Src      unsigned char *Dest      int rows
	    int columns      unsigned char NRightShift	    CODE:	    RETVAL = SDL_imageFilterSobelXShiftRight(Src, Dest, rows, columns,
       NRightShift);	  OUTPUT:	    RETVAL

   align_stack
       void gfx_image_align_stack()	 CODE:		 SDL_imageFilterAlignStack();

   restore_stack
       void gfx_image_restore_stack()	   CODE:	   SDL_imageFilterRestoreStack();

AUTHORS

       See "AUTHORS" in SDL.

perl v5.14.2							    2012-05-28					  pods::SDL::GFX::ImageFilter(3pm)
All times are GMT -4. The time now is 01:01 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy