09-25-2009
Honestly , so far
I had been trying with command line Vi , Sed commands.
trying to put the code together now , I had from the forum , so looking for <tr> and <expand> too
10 More Discussions You Might Find Interesting
1. AIX
Hi,
Please give me the detailed Differences between writing Unix Shell script and AIX Shell Scripts. Thanks in advance..... (0 Replies)
Discussion started by: haroonec
0 Replies
2. Shell Programming and Scripting
I have scripts which I want to convert in Linux format.
Note these scripts are in txt format.But I want to convert them in Linux, as DBA's will be using this script.
Any command or utility which converts tht files in proper Linux format.
Thanks in Adavce.
Kunal (1 Reply)
Discussion started by: niceboykunal123
1 Replies
3. Shell Programming and Scripting
Hello gurus,
I have three korn shell script 3.1, 3.2, 3.3. I would like to call three shell script in one shell script.
i m looking for something like this
call 3.1;
If 3.1 = "complete" then
call 3.2;
if 3.2 = ''COMPlete" then
call 3.3;
else
exit
The... (1 Reply)
Discussion started by: shashi369
1 Replies
4. Shell Programming and Scripting
Hi All,
I have a requirement to perform the following checks.
Input file is a "|" delimited file and looks like this.
A|c1|c2|c3|....
B|G1|G2|G3....
C|H1|H2|H3...
A|c4|c5|c6|....
B|G4|G5|G6....
C|H4|H5|H6...
Now the check is to see if all the "A" records have a corresponding B... (7 Replies)
Discussion started by: gsjdrr
7 Replies
5. UNIX for Dummies Questions & Answers
Hello,
I am trying to show today's date and time in a better format than ‘date' (Using positional parameters). I found a command mktime and am wondering if this is the best command to use or will this also show me the time elapse since 1/30/70? Any help would be greatly appreciated, Thanks... (3 Replies)
Discussion started by: citizencro
3 Replies
6. UNIX for Dummies Questions & Answers
Hi,
I am new to shell scripting and exploring it , I have developed few sample shell script but I have developed them on windows xp notepad and then saving them on folder and then testing them on cywgin and running perfectly...but these scripts are in dos format and I want to convert them in unix... (1 Reply)
Discussion started by: rahul125
1 Replies
7. Shell Programming and Scripting
I am trying to count records of particular format from a file and assign it to a variable. I tried below command
br_count=wc -l "inputfile.dat"| awk -F"|" '{if (NF != "14") print }'
but I amnot able to get it done. Please share me some idea how to get it done.
Thanks in advance (7 Replies)
Discussion started by: siteregsam
7 Replies
8. UNIX for Dummies Questions & Answers
Hi Friends,
Am new to Unix world and this is my first post in this forum.
I was stuck in displaying the content.
while displaying the content the below points to be taken care
1 ) The header format is repeating
2) To display the value in table format... (2 Replies)
Discussion started by: rocky2013
2 Replies
9. Shell Programming and Scripting
Hi,,
I have requirement that i need to get DISTINCT values from a table and if there are two records i need to update it to one record and then need to submit INSERT statements by using the updated value as a parameter. Here is the example follows..
SELECT DISTINCT ID FROM OFFER_GROUP WHERE... (1 Reply)
Discussion started by: Samah
1 Replies
10. Shell Programming and Scripting
I've been working on a tool to format (style) shell programs, much like gofmt for Go. After much testing and personal use, I'm throwing it out there to see if it's useful to anyone else.
GitHub - mvdan/sh: A shell parser and formatter in Go
You'll need golang to build and install it. If this... (11 Replies)
Discussion started by: mvdan
11 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)
NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS
-C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)