On Unix, it is easy to get those lines that match a pattern, by
grep pattern file
or those lines that do not, by
grep -v pattern file
but I am editing a file on Windows with Ultraedit.
Ultraedit support regular expression based search and replace.
I can delete all the lines that match a... (1 Reply)
I want to delete lines like this
sed '/FROM_HERE/,/TO_HERE/d'
but I would like to *not* delete the second match, i.e. the TO_HERE line. How can I achieve this?
Thank you! (1 Reply)
I have a text file, a sample of which is as follows:
r/- * 0: WINDOWS/Microsoft.NET/Framework/v2.0.50727/ASP.NETWebAdminFiles/Images/headerGRADIENT_Tall.gif
r/- * 0: WINDOWS/SoftwareDistribution/Download/cf8ec753e88561d2ddb53e183dc05c3e/backoff.jpg
r/- * 0: ... (2 Replies)
Hi guys,
i have the follow problem i need to delete 10 row before the pattern and 1 after and the pattern row itself.
file looks like:
frect 9.8438 25.8681 10.625 25
. dynprop \
(# \
(call fox_execute(__self))) \
(FOX_VAR_29 \
... (4 Replies)
Hello sed gurus. I am using ksh on Sun and have a file created by concatenating several other files. All files contain header rows. I just need to keep the first occurrence and remove all other header rows.
header for file
1111
2222
3333
header for file
1111
2222
3333
header for file... (8 Replies)
i have a file sample.txt containing
i want to delete lines starting with 123 neglecting spaces and tabs.
but not lines containing 123. i.e.
i want files sample.txt as
help me
thanxx (4 Replies)
Hello,
I am having hard time figuring out how to print/delete the lines between two pattern. Here is the part of the file nastran1.bdf:
RBE3 48729 32232 123456 0.30000 123 59786 59787
60114
RBE3 48732 1330 123 0.30000 123 10107... (4 Replies)
Hi,
i need help to delete all the lines between 2 matched patterns and the first pattern must be deleted too. sample as follows:
inputfile.txt
>kump_1
...........................
...........................
>start_0124
dgfhghgfh
fgfdgfh
fdgfdh
>kump_2
............................. (7 Replies)
Hi
I need to delete duplicate like pattern lines from a text file containing 2 duplicates only (one being subset of the other) using sed or awk preferably.
Input:
FM:Chicago:Development
FM:Chicago:Development:Score
SR:Cary:Testing:Testcases
PM:Newyork:Scripting
PM:Newyork:Scripting:Audit... (6 Replies)
I have a file
Line 1 a
Line 22
Line 33
Line 1 b
Line 22
Line 1 c
Line 4
Line 5
I want to delete all lines before last occurrence of a line which contains something which is defined in a variable. Say a variable var contains 'Line 1', then I need the following in the output.
... (21 Replies)
Discussion started by: Soham
21 Replies
LEARN ABOUT DEBIAN
g_confrms
g_confrms(1) GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c g_confrms(1)NAME
g_confrms - fits two structures and calculates the rmsd
VERSION 4.5.4-dev-20110404-bc5695c
SYNOPSIS
g_confrms -f1 conf1.gro -f2 conf2.gro -o fit.pdb -n1 fit1.ndx -n2 fit2.ndx -no match.ndx -[no]h -[no]version -nice int -[no]w -[no]one
-[no]mw -[no]pbc -[no]fit -[no]name -[no]label -[no]bfac
DESCRIPTION
g_confrms computes the root mean square deviation (RMSD) of two structures after least-squares fitting the second structure on the first
one. The two structures do NOT need to have the same number of atoms, only the two index groups used for the fit need to be identical.
With -name only matching atom names from the selected groups will be used for the fit and RMSD calculation. This can be useful when com-
paring mutants of a protein.
The superimposed structures are written to file. In a .pdb file the two structures will be written as separate models (use rasmol -nmr-
pdb). Also in a .pdb file, B-factors calculated from the atomic MSD values can be written with -bfac.
FILES -f1 conf1.gro Input
Structure+mass(db): tpr tpb tpa gro g96 pdb
-f2 conf2.gro Input
Structure file: gro g96 pdb tpr etc.
-o fit.pdb Output
Structure file: gro g96 pdb etc.
-n1 fit1.ndx Input, Opt.
Index file
-n2 fit2.ndx Input, Opt.
Index file
-no match.ndx Output, Opt.
Index file
OTHER OPTIONS
-[no]hno
Print help info and quit
-[no]versionno
Print version info and quit
-nice int 19
Set the nicelevel
-[no]wno
View output .xvg, .xpm, .eps and .pdb files
-[no]oneno
Only write the fitted structure to file
-[no]mwyes
Mass-weighted fitting and RMSD
-[no]pbcno
Try to make molecules whole again
-[no]fityes
Do least squares superposition of the target structure to the reference
-[no]nameno
Only compare matching atom names
-[no]labelno
Added chain labels A for first and B for second structure
-[no]bfacno
Output B-factors from atomic MSD values
SEE ALSO gromacs(7)
More information about GROMACS is available at <http://www.gromacs.org/>.
Mon 4 Apr 2011 g_confrms(1)