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Full Discussion: match range of different numbers by AWK
Top Forums Shell Programming and Scripting match range of different numbers by AWK Post 302352901 by repinementer on Monday 14th of September 2009 03:07:20 AM
Old 09-14-2009
Hey sorry for the troule
A small query. Where do I need to change the script for the following input(New kind of input(2ndone) in this every value at the end ends with additional comma)

Old-input
Code:
H19	1874741	2075014	-	619,123,113,135,1318	0,700,903,1111,1342
AF232216	77573119	77573241	-	122	0
AJ012497	168277851	168277971	-	131	0
X74605	153317693	153317967	-	274	0
AJ609435	120809513	120809640	-	128	0
AY216680	42520523	42521690	+	15,123	0,1044
EF212256	131009249	131009385	+	136	0
AY122469	50119368	50119432	-	64	0

Old-script
Code:
#!/usr/bin/awk -f 

BEGIN {
   OFS="\t"; ORS="\n" 
}
NF {
  sec = $2; fifth = split($5, _fifth, ","); sixth = split($6, _sixth, ",")
  counter = rec = ""; key = $1; flag = $4; sub(/[^ \t*]*/, "")
  dummy = sprintf("%*s", length(key),x)
  for (i=1; i<=sixth; i++) {
    second_third = sec + _sixth[i] FS _fifth[i] + sec + _sixth[i] 
    third_second = _fifth[i] + sec + _sixth[i] FS sec + _sixth[i] 
    if (flag == "+")
      rec = rec ? rec RS key dummy OFS second_third OFS flag : key OFS second_third  OFS flag
    else if (flag == "-")
      rec = rec ? rec RS key dummy OFS third_second OFS flag : key OFS third_second  OFS flag
  }
  {print (flag == "+" ? rec : rec) >>"Exon_output1.txt"}

Old-output
Code:
H19	1875360 1874741	-
H19   	1875564 1875441	-
H19   	1875757 1875644	-
H19   	1875987 1875852	-
H19   	1877401 1876083	-
AF232216	77573241 77573119	-
AJ012497	168277982 168277851	-
X74605	153317967 153317693	-
AJ609435	120809641 120809513	-
AY216680	42520523 42520538	+
AY216680        	42521567 42521690	+
EF212256	131009249 131009385	+
AY122469	50119432 50119368	-

New kind of input but need the same output like the above input

New-input needs old output

Code:
H19	1874741	2075014	-	619,123,113,135,1318,	0,700,903,1111,1342,
AF232216	77573119	77573241	-	122,	0,
AJ012497	168277851	168277971	-	131	0
X74605	153317693	153317967	-	274,	0,
AJ609435	120809513	120809640	-	128	0
AY216680	42520523	42521690	+	15,123,	0,1044,
EF212256	131009249	131009385	+	136,	0,
AY122469	50119368	50119432	-	64,	0,

Last edited by repinementer; 09-14-2009 at 04:12 AM..
 

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LEARN ABOUT DEBIAN

grib_get_data

GRIB_GET_DATA(1)						   User Commands						  GRIB_GET_DATA(1)

NAME

       grib_get_data - Print a latitude, longitude, data values list

DESCRIPTION

       Print a latitude, longitude, data values list

USAGE

       grib_get_data [options] grib_file grib_file ...

OPTIONS

       -M   Multi-grib support off. Turn off support for multiple fields in single grib message

       -m missingValue
	      The  missing value is given through this option.	Any string is allowed and it is printed in place of the missing values. Default is
	      to skip the missing values.

       -p key[:{s/d/l}],key[:{s/d/l}],...
	      Declaration of keys to print.  For each key a string (key:s) or a double (key:d) or a long (key:l) type can  be  requested.  Default
	      type is string.

       -R out_file_name
	      Redirect the standard output to "out_file_name".	Faster than the shell redirect (>) because buffered.

       -F format
	      C style format for values. Default is "%.10e"

       -w key[:{s/d/l}]{=/!=}value,key[:{s/d/l}]{=/!=}value,...
	      Where  clause.   Grib  messages  are  processed  only  if  they  match all the key/value constraints.  A valid constraint is of type
	      key=value or key!=value.	For each key a string (key:s) or a double (key:d) or a long (key:l) type can be specified. Default type is
	      string.

       -f   Force. Force the execution not to fail on error.

       -G   GRIBEX compatibility mode.

       -7   Does not fail when the message has wrong length

       -V   Version.

AUTHOR

       This manpage has been autogenerated by Enrico Zini <enrico@debian.org>from the command line help of grib_get_data.

grib_get_data							    April 2009							  GRIB_GET_DATA(1)
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