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Full Discussion: match range of different numbers by AWK
Top Forums Shell Programming and Scripting match range of different numbers by AWK Post 302352901 by repinementer on Monday 14th of September 2009 03:07:20 AM
Old 09-14-2009
Hey sorry for the troule
A small query. Where do I need to change the script for the following input(New kind of input(2ndone) in this every value at the end ends with additional comma)

Old-input
Code:
H19	1874741	2075014	-	619,123,113,135,1318	0,700,903,1111,1342
AF232216	77573119	77573241	-	122	0
AJ012497	168277851	168277971	-	131	0
X74605	153317693	153317967	-	274	0
AJ609435	120809513	120809640	-	128	0
AY216680	42520523	42521690	+	15,123	0,1044
EF212256	131009249	131009385	+	136	0
AY122469	50119368	50119432	-	64	0

Old-script
Code:
#!/usr/bin/awk -f 

BEGIN {
   OFS="\t"; ORS="\n" 
}
NF {
  sec = $2; fifth = split($5, _fifth, ","); sixth = split($6, _sixth, ",")
  counter = rec = ""; key = $1; flag = $4; sub(/[^ \t*]*/, "")
  dummy = sprintf("%*s", length(key),x)
  for (i=1; i<=sixth; i++) {
    second_third = sec + _sixth[i] FS _fifth[i] + sec + _sixth[i] 
    third_second = _fifth[i] + sec + _sixth[i] FS sec + _sixth[i] 
    if (flag == "+")
      rec = rec ? rec RS key dummy OFS second_third OFS flag : key OFS second_third  OFS flag
    else if (flag == "-")
      rec = rec ? rec RS key dummy OFS third_second OFS flag : key OFS third_second  OFS flag
  }
  {print (flag == "+" ? rec : rec) >>"Exon_output1.txt"}

Old-output
Code:
H19	1875360 1874741	-
H19   	1875564 1875441	-
H19   	1875757 1875644	-
H19   	1875987 1875852	-
H19   	1877401 1876083	-
AF232216	77573241 77573119	-
AJ012497	168277982 168277851	-
X74605	153317967 153317693	-
AJ609435	120809641 120809513	-
AY216680	42520523 42520538	+
AY216680        	42521567 42521690	+
EF212256	131009249 131009385	+
AY122469	50119432 50119368	-

New kind of input but need the same output like the above input

New-input needs old output

Code:
H19	1874741	2075014	-	619,123,113,135,1318,	0,700,903,1111,1342,
AF232216	77573119	77573241	-	122,	0,
AJ012497	168277851	168277971	-	131	0
X74605	153317693	153317967	-	274,	0,
AJ609435	120809513	120809640	-	128	0
AY216680	42520523	42521690	+	15,123,	0,1044,
EF212256	131009249	131009385	+	136,	0,
AY122469	50119368	50119432	-	64,	0,

Last edited by repinementer; 09-14-2009 at 04:12 AM..
 

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LEARN ABOUT DEBIAN

locale::script

Locale::Script(3perl)					 Perl Programmers Reference Guide				     Locale::Script(3perl)

NAME

       Locale::Script - standard codes for script identification

SYNOPSIS

	  use Locale::Script;

	  $script  = code2script('phnx');		      # 'Phoenician'
	  $code    = script2code('Phoenician'); 	      # 'Phnx'
	  $code    = script2code('Phoenician',
				 LOCALE_CODE_NUMERIC);	      # 115

	  @codes   = all_script_codes();
	  @scripts = all_script_names();

DESCRIPTION

       The "Locale::Script" module provides access to standards codes used for identifying scripts, such as those defined in ISO 15924.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 15924
       four-letter codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying scripts. The ones currently supported are:

       alpha
	   This is a set of four-letter (capitalized) codes from ISO 15924 such as 'Phnx' for Phoenician.

	   This code set is identified with the symbol "LOCALE_SCRIPT_ALPHA".

	   The Zxxx, Zyyy, and Zzzz codes are not used.

	   This is the default code set.

       numeric
	   This is a set of three-digit numeric codes from ISO 15924 such as 115 for Phoenician.

	   This code set is identified with the symbol "LOCALE_SCRIPT_NUMERIC".

ROUTINES

       code2script ( CODE [,CODESET] )
       script2code ( NAME [,CODESET] )
       script_code2code ( CODE ,CODESET ,CODESET2 )
       all_script_codes ( [CODESET] )
       all_script_names ( [CODESET] )
       Locale::Script::rename_script  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Script::add_script  ( CODE ,NAME [,CODESET] )
       Locale::Script::delete_script  ( CODE [,CODESET] )
       Locale::Script::add_script_alias  ( NAME ,NEW_NAME )
       Locale::Script::delete_script_alias  ( NAME )
       Locale::Script::rename_script_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Script::add_script_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Script::delete_script_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes man page.

SEE ALSO

       Locale::Codes
       Locale::Constants
       http://www.unicode.org/iso15924/
	   Home page for ISO 15924.

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 1997-2001 Canon Research Centre Europe (CRE).
	  Copyright (c) 2001-2010 Neil Bowers
	  Copyright (c) 2010-2011 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.14.2							    2011-09-26						     Locale::Script(3perl)
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