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Full Discussion: match range of different numbers by AWK
Top Forums Shell Programming and Scripting match range of different numbers by AWK Post 302352901 by repinementer on Monday 14th of September 2009 03:07:20 AM
Old 09-14-2009
Hey sorry for the troule
A small query. Where do I need to change the script for the following input(New kind of input(2ndone) in this every value at the end ends with additional comma)

Old-input
Code:
H19	1874741	2075014	-	619,123,113,135,1318	0,700,903,1111,1342
AF232216	77573119	77573241	-	122	0
AJ012497	168277851	168277971	-	131	0
X74605	153317693	153317967	-	274	0
AJ609435	120809513	120809640	-	128	0
AY216680	42520523	42521690	+	15,123	0,1044
EF212256	131009249	131009385	+	136	0
AY122469	50119368	50119432	-	64	0

Old-script
Code:
#!/usr/bin/awk -f 

BEGIN {
   OFS="\t"; ORS="\n" 
}
NF {
  sec = $2; fifth = split($5, _fifth, ","); sixth = split($6, _sixth, ",")
  counter = rec = ""; key = $1; flag = $4; sub(/[^ \t*]*/, "")
  dummy = sprintf("%*s", length(key),x)
  for (i=1; i<=sixth; i++) {
    second_third = sec + _sixth[i] FS _fifth[i] + sec + _sixth[i] 
    third_second = _fifth[i] + sec + _sixth[i] FS sec + _sixth[i] 
    if (flag == "+")
      rec = rec ? rec RS key dummy OFS second_third OFS flag : key OFS second_third  OFS flag
    else if (flag == "-")
      rec = rec ? rec RS key dummy OFS third_second OFS flag : key OFS third_second  OFS flag
  }
  {print (flag == "+" ? rec : rec) >>"Exon_output1.txt"}

Old-output
Code:
H19	1875360 1874741	-
H19   	1875564 1875441	-
H19   	1875757 1875644	-
H19   	1875987 1875852	-
H19   	1877401 1876083	-
AF232216	77573241 77573119	-
AJ012497	168277982 168277851	-
X74605	153317967 153317693	-
AJ609435	120809641 120809513	-
AY216680	42520523 42520538	+
AY216680        	42521567 42521690	+
EF212256	131009249 131009385	+
AY122469	50119432 50119368	-

New kind of input but need the same output like the above input

New-input needs old output

Code:
H19	1874741	2075014	-	619,123,113,135,1318,	0,700,903,1111,1342,
AF232216	77573119	77573241	-	122,	0,
AJ012497	168277851	168277971	-	131	0
X74605	153317693	153317967	-	274,	0,
AJ609435	120809513	120809640	-	128	0
AY216680	42520523	42521690	+	15,123,	0,1044,
EF212256	131009249	131009385	+	136,	0,
AY122469	50119368	50119432	-	64,	0,

Last edited by repinementer; 09-14-2009 at 04:12 AM..
 

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LEARN ABOUT DEBIAN

kawari_decode2

KAWARI8(6)							   Games Manual 							KAWARI8(6)

NAME

       kawari_encode, kawari_encode2, kawari_decode2 -- kawari 8.0 encoder/decoder

SYNOPSIS

       kawari_encode [file ...]

       kawari_encode2 [file ...]

       kawari_decode2 [file ...]

DESCRIPTION

       This manual page documents briefly the kawari command.

       This  manual  page was written for the Debian distribution because the original program does not have a manual page.  Instead, it has docu-
       mentation written in HTML format. For detailed descriptions, see doc-base.

       kawari_encode encodes kawari scripts to an encoded file. So the users for the scripts cannot easily read the content. It  can  be  used	to
       protect the content of Kawari scripts.  It takes several text files as inputs and converts them to .kaw files separately.

       kawari_encode2  is an advanced kawari_encode. It is able to assign a symmetric key like some encrypting systems. The key affects the encod-
       ing system. Users need the key to decode them.

       kawari_decode2 is a decoder of the .kaw files. It takes several .kaw files and convert them back to .txt files. If the kaw files is encoded
       by kawari_encode2, the key must be provided correctly for decoding.

AUTHOR

       This manual page was written by Ying-Chun Liu (PaulLiu) <grandpaul@gmail.com> for the Debian system (but may be used by others).  This man-
       ual page is in public domain and is freely reproduced, distributed, transmitted, used, modified, built upon, or otherwise exploited by any-
       one for any purpose, commercial or non-commercial, and in any way, including by methods that have not yet been invented or conceived.

																	KAWARI8(6)
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