for ENTRY in `grep -i group <file> | cut -f2 -d: | tr ',' '\012'`; do echo $ENTRY; done
replace "echo $ENTRY" by whatever suits ur needs, e.g.
ARRAY[$INDEX]=${ENTRY}
((INDEX=${INDEX}+1))
I have a small problem, Instead of text file, I have the text coming as an o/p of an other script i.e something similar to
but I don't see the same result as the original code. Please can you correct me?
I have a folder that contains say 50 files in a sequential order:
cdf_1.txt
cdf_2.txt
cdf_3.txt
cdf_3.txt
.
.
.
cdf_50.txt.
I need to merge these files in the same order into a single tab delimited file.
I used the following shell script:
for x in {1..50};
do cat cdf_${x}.txt >>... (3 Replies)
I have a file with the contents below
jan_t=jan;feb_t=feb;mar_t=mar;year=2010
jan_t=null;feb_t=feb;mar_t=mar;year=2010
jan_t=jan;feb_t=feb;mar_t=mar;year=2010
I want to extract out all the fields values ending with "_t" , however, i want to exclude feb_t and mar_t from the results
In... (6 Replies)
Hi,
I am having source (Oracle) as given below.
SourceOBJECT_NAMESUBOBJECT_NAMEOBJECT_IDDATA_OBJECT_IDOBJECT_TYPECREATEDLAST_DDL_TIMESTAMPSTATUSTGSTEST 336559336559TABLE4/15/2009 10:374/15/2009 10:372009-04-15:10:37:57VALIDNNNUNIX 336559336559TABLE4/15/2009 10:374/15/2009... (3 Replies)
Hi all,
I'm trying to get a bash script working for a program (bowtie) which takes a list of input files (*.fastq) and assembles them to an output file (outfile.sam). All the .fastq files are in one folder in my home directory (~/infiles).
The problem is that the 'bowtie' requires that... (7 Replies)
Hi All,
I need a unix script to convert .csv files to .skv files (changing a comma delimited file to a semi colon delimited file). I am a unix newbie and so don't know where to start. The script will be scheduled using cron and needs to convert each .csv file in a particular folder to a .skv... (4 Replies)
Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted!
1. The problem statement, all variables and given/known data:
Hi Guys,
I am new on the scripting world and would like ask for help if you can.
Here are my questions... (1 Reply)
Hi
I have the following file
# cat red
it.d-state = 50988 41498 45 0 0 0
it.age_buffer= 1500
it.dir = 1
I need to grep lines that are present after "="
But when I do so, few lines has more than one value and some has one
How to parse the line
I have used the follwing... (6 Replies)
Hi,
I am wanting to create a script that will construct a SQL statement based on a a space delimited string that it read from a config file.
Example of the SQL will be
For example, it will read a string like "AAA BBB CCC" and assign to a variable named IN_STRING.
I then concatenate... (2 Replies)
I have a large database with the following structure:
Indicword,Indicword,Indicword=English
on a line.
Not all lines will have this structure. Some might have a single word mapping to a single word in Indic.
An example will make this clear
... (4 Replies)
Discussion started by: gimley
4 Replies
LEARN ABOUT DEBIAN
bio::biblio::person
Bio::Biblio::Person(3pm) User Contributed Perl Documentation Bio::Biblio::Person(3pm)NAME
Bio::Biblio::Person - Representation of a person
SYNOPSIS
$obj = Bio::Biblio::Person->new(-lastname => 'Capek',
-firstname => 'Karel');
#--- OR ---
$obj = Bio::Biblio::Person->new();
$obj->firstname ('Karel');
$obj->lastname ('Capek');
DESCRIPTION
A storage object for a person related to a bibliographic resource.
Attributes
The following attributes are specific to this class (however, you can also set and get all attributes defined in the parent classes):
affiliation
email
firstname
forename
initials
lastname
middlename
postal_address
suffix
SEE ALSO
o OpenBQS home page: http://www.ebi.ac.uk/~senger/openbqs/
o Comments to the Perl client: http://www.ebi.ac.uk/~senger/openbqs/Client_perl.html
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS
Heikki Lehvaslaiho (heikki-at-bioperl-dot-org) Martin Senger (senger@ebi.ac.uk)
COPYRIGHT
Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided "as is" without warranty of any kind.
perl v5.14.2 2012-03-02 Bio::Biblio::Person(3pm)