Can anyone help me with a shell script that can do the following:
I have a data in fasta format (first line is the header, followed by a sequence of characters).
I want to reformat the data such that I get it in the following format, such that the entire sequence of characters for one entry is printed in one line and the name of the entry eg. ALLLY is now printed as a tab delimited besides the sequence of characters.
Any suggestion or working script is highly appreciated.
biobee
Last edited by Franklin52; 08-07-2009 at 02:18 PM..
Reason: adding code tags, please use code tags!
I am trying to write an awk program to reformat a data table and convert the date to julian time. I have all the individual steps working, but I am having some issues joing them into one program. Can anyone help me out? Here is my code so far:
# This is an awk program to convert the dates from... (4 Replies)
I am new to Perl. I need to reformat a data file as the last part of a script I am working on. I am stuck on this.
Here is the current format:
CUSTOMER Filename 09/04/07-08:49
CUSTOMER Filename 09/04/07-08:52
CUSTOMER Filename 09/04/07-08:52
CUSTOMER2 Filename 09/04/07-08:49
CUSTOMER2... (3 Replies)
Hi ,
I have a text file noname.txt containing 1000+ records like this. One of the record I have given below.
Input will b e like this
BOT:
2010/06/01 00:25:59
21 = "private"
Access-Method = 31
NCC = GBR
01 = "340806@osiris.fr.ft"
04 =... (2 Replies)
I have a file which have data like
A.txt
a
1Jan I am in a1.
1Jan I was born.
2Jan I am here.
3Jan I am in a3.
b
1Jan I am in b1.
c
2Jan I am in c2.
d
2Jan I am in d2.
5jan I am in d5.
date in the file might be vary evertime. (9 Replies)
I am helping my wife set up a real estate site and I am starting to integrate MLS listings. We are using a HostGator level 5 VPS running CentOS and have full root and SSH access to the VPS.
Thus far I have automated the daily FTP download of listings from our MLS server using a little sh script.... (4 Replies)
Locale::Script(3pm) Perl Programmers Reference Guide Locale::Script(3pm)NAME
Locale::Script - standard codes for script identification
SYNOPSIS
use Locale::Script;
$script = code2script('phnx'); # 'Phoenician'
$code = script2code('Phoenician'); # 'Phnx'
$code = script2code('Phoenician',
LOCALE_CODE_NUMERIC); # 115
@codes = all_script_codes();
@scripts = all_script_names();
DESCRIPTION
The "Locale::Script" module provides access to standards codes used for identifying scripts, such as those defined in ISO 15924.
Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 15924
four-letter codes will be used.
SUPPORTED CODE SETS
There are several different code sets you can use for identifying scripts. A code set may be specified using either a name, or a constant
that is automatically exported by this module.
For example, the two are equivalent:
$script = code2script('phnx','alpha');
$script = code2script('phnx',LOCALE_SCRIPT_ALPHA);
The codesets currently supported are:
alpha, LOCALE_SCRIPT_ALPHA
This is a set of four-letter (capitalized) codes from ISO 15924 such as 'Phnx' for Phoenician. It also includes additions to this set
included in the IANA language registry.
The Zxxx, Zyyy, and Zzzz codes are not used.
This is the default code set.
num, LOCALE_SCRIPT_NUMERIC
This is a set of three-digit numeric codes from ISO 15924 such as 115 for Phoenician.
ROUTINES
code2script ( CODE [,CODESET] )
script2code ( NAME [,CODESET] )
script_code2code ( CODE ,CODESET ,CODESET2 )
all_script_codes ( [CODESET] )
all_script_names ( [CODESET] )
Locale::Script::rename_script ( CODE ,NEW_NAME [,CODESET] )
Locale::Script::add_script ( CODE ,NAME [,CODESET] )
Locale::Script::delete_script ( CODE [,CODESET] )
Locale::Script::add_script_alias ( NAME ,NEW_NAME )
Locale::Script::delete_script_alias ( NAME )
Locale::Script::rename_script_code ( CODE ,NEW_CODE [,CODESET] )
Locale::Script::add_script_code_alias ( CODE ,NEW_CODE [,CODESET] )
Locale::Script::delete_script_code_alias ( CODE [,CODESET] )
These routines are all documented in the Locale::Codes::API man page.
SEE ALSO
Locale::Codes
The Locale-Codes distribution.
Locale::Codes::API
The list of functions supported by this module.
http://www.unicode.org/iso15924/
Home page for ISO 15924.
http://www.iana.org/assignments/language-subtag-registry
The IANA language subtag registry.
AUTHOR
See Locale::Codes for full author history.
Currently maintained by Sullivan Beck (sbeck@cpan.org).
COPYRIGHT
Copyright (c) 1997-2001 Canon Research Centre Europe (CRE).
Copyright (c) 2001-2010 Neil Bowers
Copyright (c) 2010-2012 Sullivan Beck
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.16.2 2012-10-11 Locale::Script(3pm)