Hello,
Can someone help me to do this with awk or sed? I have a file with multiple lines, each line has many fields separated with a tab. I would like to add one more field holding 'na' in between the first and second fields.
old file looks like,
1, field1 field2 field3 ...
2, field1... (7 Replies)
I have a file which was pipe delimited, I need to make it tab delimited. I tried with sed but no use
cat file | sed 's/|//t/g'
The above command substituted "/t" not tab in the place of pipe.
Sample file:
abc|123|2012-01-30|2012-04-28|xyz
have to convert to:
abc 123... (6 Replies)
Hi How to make tab delimited file to space delimited?
in put file:
ABC kgy
jkh ghj
ash kjl
o/p file:
ABC kgy
jkh ghj
ash kjl
Use code tags, thanks. (1 Reply)
Hi Forum.
I'm struggling to find a solution for the following issue.
I have multiple files a1.txt, a2.txt, a3.txt, etc. and I would like to insert a tab-delimited header record at the beginning of each of the files.
This is my code so far but it's not working as expected.
for i in... (2 Replies)
Here's a sample of the data:
NAME BIRTHDAY SEX LOCATION AGE ID
Jim 05/11/1986 M Japan 27 86
Rei 08/25/1990 F Korea 24 33
Jane 02/24/1985 F India 29 78
I've been trying to sort files using the... (8 Replies)
Thank you for 4 looking this post.
We have a tab delimited file where we are facing problem in a lot of funny character. I have tried using awk but failed that is not working.
In the 5th field ID which is supposed to be a integer only of that file, we are getting corrupted data as below.
I... (12 Replies)
Hi all ,
I have a file having 12 columns tab delimited .
I need to read this file and remove the column 3 and column 4 and insert a word in column 3 as "AVIALABLE "
Is there a way to do this . I am trying like below
Thanks
DJ
cat $FILENAME|awk -F"\t" '{ print $1 "\t... (3 Replies)
Hi, I have a rquirement in unix as below .
I have a text file with me seperated by | symbol and i need to generate a excel file through unix commands/script so that each value will go to each column.
ex:
Input Text file:
1|A|apple
2|B|bottle
excel file to be generated as output as... (9 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS -C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)