Hi folks,
I need to search and replace specific text in a file and replace it. I have a text file that does not have any newlines or carriage returns. All newlines have been removed. Here is what I need to do.
Find the exact string “DH” (quotes included) and replace it with \n”DH” (basically... (6 Replies)
Hello Folks,
Anyone know how I can replace this line in file.xml
<oacore_nprocs oa_var="s_oacore_nprocs">8</oacore_nprocs>
with this line
<oacore_nprocs oa_var="s_oacore_nprocs">1</oacore_nprocs>
using sed or awk ?
Thanks for your time.
Cheers,
Dave (7 Replies)
Is there a way to use the sed command to
1) search a specified pattern
2) in the line where that pattern is found, replace from character N to character N+4 with a new 4-character string.
Thks in advance! (5 Replies)
Hi,
In a file FILE, the following lines appear :
WORD 8 8 8
ANOTHERWORD blabla
...
Directly in the prompt, if I type
$sed '/WORD/s/8/10/g' FILE
it replace the 8's by 10's in file :
$cat FILE
WORD 10 10 10
ANOTHERWORD blabla
... (9 Replies)
please help in making sed singleline command
i need to insert dos new line (CR LF) before
" 34 matching device(s) found on \\cpu1."
" 6 matching device(s) found on \\cpu7."
" 102 matching device(s) found on \\mainserver."
the problem is that sometimes there are both CR LF before strings and... (1 Reply)
hi,
im new for sed, anyone can help me to these in sed command
my output file.txt
"aaa",a1,bbb
"ddd",a1,ccc
"eee",a1,www
need to change a1, to "a1","
output i need
"aaa","a1","bbb
"ddd","a1","ccc
"eee","a1","www
thanks in advance
fsp (2 Replies)
Hi, I'm and Android developer using Mac OSX 10.7. I use Dsixda's Android Kitchen to develop my roms. I had it working fine on 10.6.8 and it still worked flawlessly when updating to 10.7. I installed Macports, and installed some packages, and then tried to run the Android Kitchen. I CD'd to the... (3 Replies)
Hi All
I have a simple text file and I want to be able to replace any alpha character and comma combination with any other symbol of my choice
here is the text file I want to replace:
pear
apple
ban,ana
grape
",g1234,"
te,st1
here is how it should look afterwards:
pear... (4 Replies)
Hi guys, thanks for accepting me in your forum .. I am trying to clean some hacked PHP files using SSH .. I am using this command:
find . -type f -print0 | xargs -0 sed -i '/god_mod/d'
<?php ... (3 Replies)
I have one big file of size 9GB (big_file.txt). This big file has sentences and paragraphs like any usual English document. I have another file consisting of replacement strings for sed to use. The file name is replace.sed and each entry in one line looks like this:
s/\<shout\>/shout/g
s/\<b is... (2 Replies)
Discussion started by: shoaibjameel123
2 Replies
LEARN ABOUT DEBIAN
bio::searchio::xml::blasthandler
Bio::SearchIO::XML::BlastHandler(3pm) User Contributed Perl Documentation Bio::SearchIO::XML::BlastHandler(3pm)NAME
Bio::SearchIO::XML::BlastHandler - XML Handler for NCBI Blast XML parsing.
SYNOPSIS
# This is not to be used directly.
DESCRIPTION
This is the XML handler for BLAST XML parsing. Currently it passes elements off to the event handler, which is ultimately responsible for
Bio::Search object generation.
This was recently split off from the original code for Bio::SearchIO::blastxml primarily for maintenance purposes.
DEPENDENCIES
In addition to parts of the Bio:: hierarchy, this module uses:
XML::SAX::Base
which comes with the XML::SAX distribution.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich, Chris Fields
Email jason-at-bioperl.org Email cjfields-at-uiuc dot edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
SAX methods
start_document
Title : start_document
Usage : $parser->start_document;
Function: SAX method to indicate starting to parse a new document
Returns : none
Args : none
end_document
Title : end_document
Usage : $parser->end_document;
Function: SAX method to indicate finishing parsing a new document
Returns : Bio::Search::Result::ResultI object
Args : none
start_element
Title : start_element
Usage : $parser->start_element($data)
Function: SAX method to indicate starting a new element
Returns : none
Args : hash ref for data
end_element
Title : end_element
Usage : $parser->end_element($data)
Function: Signals finishing an element
Returns : Bio::Search object dpending on what type of element
Args : hash ref for data
characters
Title : characters
Usage : $parser->characters($data)
Function: Signals new characters to be processed
Returns : characters read
Args : hash ref with the key 'Data'
perl v5.14.2 2012-03-02 Bio::SearchIO::XML::BlastHandler(3pm)