Compare selected columns from a file and print difference Post: 302335479

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compare 2 file and print difference in the third file URG PLS

Hi I have two files in unix. I need to compare two files and print the differed lines in other file Eg file1 1111 2222 3333 file2 1111 2222 3333 4444 5555 newfile 4444 5555 Thanks In advance

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shell script(Preferably awk or sed) to print selected number of columns from each row

Hi Experts, The question may look very silly by seeing the title, but please have a look at it clearly. I have a text file where the first 5 columns in each row were supposed to be attributes of a sample(like sample name, number, status etc) and the next 25 columns are parameters on which...

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compare two columns of different files and print the matching second file..

Hi, I have two tab separated files; file1: S.No ddi fi cu o/l t+ t- 1 0.5 0.6 o 0.1 0.2 2 0.2 0.3 l 0.3 0.4 3 0.5 0.8 l 0.1 0.6 ...

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one file . . importing table employee 119 . . importing table jobs 1 2nd file . . importing table employee 120 . . importing table jobs 1 and would like...

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hi! i researched about comparing two columns here and got an answer. but after examining my two files, i found out that the first columns of the two files are not unique with each other. all i want to compare is the 2nd and 3rd column. FILE 1: ABS 456 315 EBS 923 163 JYQ3 654 237 FILE 2:...

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compare two files, selected columns only

hi! i have two files that looks like this file 1: ABS 123 456 BCDG 124 542 FGD 459 762 file 2: ABS 132 456 FGD 459 762 output would be: from file1: ABS 132 456 BCDG 124 542 from file 2: ABS 132 456

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awk compare specific columns from 2 files, print new file

Hello. I have two files. FILE1 was extracted from FILE2 and modified thanks to help from this post. Now I need to replace the extracted, modified lines into the original file (FILE2) to produce the FILE3. FILE1 1466 55.27433 14.72050 -2.52E+03 3.00E-01 1.05E+04 2.57E+04 1467 55.27433...

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Compare columns of multiple files and print those unique string from File1 in an output file.

Hi, I have multiple files that each contain one column of strings: File1: 123abc 456def 789ghi File2: 123abc 456def 891jkl File3: 234mno 123abc 456def In total I have 25 of these type of file.

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[Solved] awk compare two different columns of two files and print all from both file

Hi, I want to compare two columns from file1 with another two column of file2 and print matched and unmatched column like this File1 1 rs1 abc 3 rs4 xyz 1 rs3 stu File2 1 kkk rs1 AA 10 1 aaa rs2 DD 20 1 ccc ...

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Compare 2 columns from the same file and print a value depending on the result

Hello Unix gurus, I have a file with this format (example values): label1 1 0 label2 1 0 label3 0.4 0.6 label4 0.5 0.5 label5 0.1 0.9 label6 0.9 0.1 in which: column 1 is a row label column 2 and 3 are values I would like to do a simple operation on this table and get the...

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vcf-compare

VCF-COMPARE(1)							   User Commands						    VCF-COMPARE(1)

NAME

       vcf-compare - compare bgzipped and tabix indexed VCF files

SYNOPSIS

       compare-vcf [OPTIONS] file1.vcf file2.vcf ...

DESCRIPTION

       About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)

OPTIONS

       -c, --chromosomes <list|file>
	      Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.

       -d, --debug
	      Debugging information. Giving the option multiple times increases verbosity

       -H, --cmp-haplotypes
	      Compare haplotypes, not only positions

       -m, --name-mapping <list|file>
	      Use  with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
	      per line in a file. The names are colon separated and must appear in the same order as the files on the command line.

       -R, --refseq <file>
	      Compare the actual sequence, not just positions. Use with -w to compare indels.

       -r, --regions <list|file>
	      Process the given regions (comma-separated list or one region per line in a file).

       -s, --samples <list>
	      Process only the listed samples. Excluding unwanted samples may increase performance considerably.

       -w, --win <int>
	      In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be  it  a
	      SNP or an indel).

       -h, -?, --help
	      This help message.

vcf-compare 0.1.5						     July 2011							    VCF-COMPARE(1)

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1. Shell Programming and Scripting

compare 2 file and print difference in the third file URG PLS

Discussion started by: evvander

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shell script(Preferably awk or sed) to print selected number of columns from each row

Discussion started by: ks_reddy

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compare two columns of different files and print the matching second file..

Discussion started by: vasanth.vadalur

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Compare two columns in two files and print the difference

Discussion started by: jhonnyrip