Extracting DNA sequences from GenBank files using Perl Post: 302328545

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insdseqget

INSDSEQGET(1)						     NCBI Tools User's Manual						     INSDSEQGET(1)

NAME

       insdseqget - format sequences from GenBank as an XML INSDSet

SYNOPSIS

       insdseqget [-] [-d filename] [-i filename] [-m n/p/b] [-n] [-o filename] [-v]

DESCRIPTION

       insdseqget retrieves biological sequence data from GenBank (according to an input list of GI accession numbers) and prints it out as an XML
       INSDSet document.

OPTIONS

       A summary of options is included below.

       -      Print usage message

       -d filename
	      Input file name for date list (desired accessions, one per line, followed by a blank line and a list of allowed dates, also one  per
	      line)

       -i filename
	      Input file name for GI list (default = stdin)

       -m n/p/b
	      Molecule type:
	      n      Nucleotide (default)
	      p      Protein
	      b      Both

       -n     Return only new records (for which the given GI refers to an old version)

       -o filename
	      Output file name for the XML INSDSet (default = stdout)

       -v     Fetch SNP Variations

AUTHOR

       The National Center for Biotechnology Information.

SEE ALSO

       asn2gb(1), gbseqget(1).

NCBI
								    2006-04-14							     INSDSEQGET(1)