1.Daily there will be 14 files in the data directory
2.someday's the 14 files receive more than once r twice with different time stamps....we need to chk the count of the file and if the count of the file is two.we need to combine the both the files.
3. if any duplicate data is there just... (1 Reply)
I saw a couple of posts here referencing how to handle more than one input field separator in awk. I figured I would share how I (just!) figured out how to turn this line in a logfile:
90000000000000000000010001 name... (4 Replies)
All,
I am trying to figure out a script to run in windows that will allow me to match on First column in file1 to 8th Column in File2 then
Insert file1 column2 to file2 column4 then create a new file.
File1:
12345 Sam
12346 Bob
12347 Bill
File2:... (1 Reply)
Hi ,
I m trying to write a script in linux .
The problem is the output of command get changed every now and then.
Just like top command in linux.
How would i manipulate the output of the command ?
The command i m talking about gives the real time values of performance of hosted guest... (3 Replies)
Hi, I'm trying to make a script which you type the year, select the month and day and then create the date in the format 2010-12-7.
#!/bin/bash
dia () {
echo " Seleccione el dia:"
select file in 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 Salir
do... (6 Replies)
Hi All,
how can i edit my original data and add more data if my 2nd script outputs SUCESS?
ex.
input file:
1.txt
nik,is,the
1script.sh
if 2ndscript.sh output SUCCESS then i'm going to edit my input file and add data best,pogi..
sample outputdata.
nik,is,the,best,pogi
2ndscript.sh... (3 Replies)
Hi,
I have three different files about a warehouse's stock status.
Each file shows storage locations, stored product names, quantity of the part and at last column, its price.
When there is a change in price, I open those files one by one, search related product name at each row and change... (4 Replies)
Hi there,
I'm a newbie in unix and am fishing for options related to how raw input data files are handled. The scenario, as I'm sure y'all must be very familiar with, is this : we receive upwards of 50 data files in ASCII format from various source systems - now each file has its own structure... (3 Replies)
i have written my shell script in notepad however i am struggling to pass the data file to be read to the script the data file is of .txt format. My target is to run the shell script from the terminal and pass 3 arguments e.g. polg@DESKTOP-BVPDC5C:~/CS1420/coursework$ bash valsplit.sh input.txt... (11 Replies)
I have a large file that I need to print certain sections out of.
file.txt
/alpha/beta/delta/gamma/425/590/USC00015420.blah.lt.0.01.str:USC00015420Y2017M10BLALT.01 12 13 14 -9 1 -9 -9 -9 -9 -9 1 2 3 4 5 -9 -9
I need to print the "USC00015420" and... (5 Replies)
Discussion started by: ncwxpanther
5 Replies
LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1)NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS -c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)