06-08-2009
Tyler_durden : You are a cool man. Got o/p with small concern.
One doubt...
If the fields contain spaces in their values i,e
if class1 is "Class One"
class 2 is "Class Two-2"
OR Birthday may be "Birth Day"
the script is not working. But I need the script to be working as the same even if the fieldnames contains spaces.
To remove space from the field I may use : sed 's/ //g'
Guide me how to use this inside perl. Thankyou very much.
Last edited by Hunter85; 06-10-2009 at 10:07 AM..
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
File 1
3337304 2 4 DH.ER@TORONTO.CA 20080504 04622
3337305 2 4 A@C.COM 20080504 04622
3337306 2 4 JO@NET.NET 20080504 04622
3337307 2 4 L@GMAIL.COM 20080504 05344
2479201 2 2 ORY@YAHOO.COM 20080504 05344
File 2
... (5 Replies)
Discussion started by: rudoraj
5 Replies
2. Shell Programming and Scripting
I have two files with ids and email addresses. File 2 cotains a subset of the records in file 1. The key field is the first field containing the id.
file 1:
123|myadr@abc.com
456|myadr2@abc.com
789|myadr3@abc.com
file 2:
456|adr456@xyz.com
Where the record appears in the second... (3 Replies)
Discussion started by: tltroy
3 Replies
3. Shell Programming and Scripting
Hi,
i want to compare two files by one field say $3 in file1 needs to compare with $2 in file2.
sample file1 - reqd_charge_code
2263881188,24570896,439
2263881964,24339077,439
2263883220,22619162,228
2263884224,24631840,442
2263884246,22612161,442
sample file2 - rg_j
... (2 Replies)
Discussion started by: raghavendra.cse
2 Replies
4. Shell Programming and Scripting
I've 2 files. Need to compare File1.Field1,File1.Field2 with File2.Field1,File2.Field2. If matches then create a new file.
File1
10 A|ADB|967143.24|1006101.5
3E HK|DHB|24294.76|242513.89
ABN ACU|ADB|22104.69|51647.14
ABN BU|DBA|39137.14|109128.38
ABN|ADB|64466.89|167936.55
ABOC... (2 Replies)
Discussion started by: buster
2 Replies
5. Programming
Hi,
I have two files formatted as following:
File 1: (user_num_ID , realID) (the NR here is 41671)
1 cust_034_60
2 cust_80_91
3 cust_406_4
..
..
File 2: (realID , clusterNumber) (total NR here is 1000)
cust_034_60 2
cust_406_4 3
..
.. (11 Replies)
Discussion started by: amarn
11 Replies
6. UNIX for Dummies Questions & Answers
Hey everybody,
I am new here and already a question to ask, I just recently started some bioinformatic work for my PhD so I am slowly learning
Anyway, here is my problem, I have two text files, one contains the complete data file with 43000 genes and their read counts for all my samples... (1 Reply)
Discussion started by: ant55
1 Replies
7. Shell Programming and Scripting
I want to compare File1 and File2 (Separated by spaces) using four fields (Column 1,2,4,5).
Logic: If column 1 and 2 of File1 and File2 match exactly and if the File2 has the same characters as any of the characters present in column 4 and 5 of file1 then those lines of file1 and file2 are... (1 Reply)
Discussion started by: NamS
1 Replies
8. Shell Programming and Scripting
Dear All,
I want to compare File1 and File2 (Separated by spaces) using four fields (Column 1,2,4,5).
Logic: If column 1 and 2 of File1 and File2 match exactly and if the File2 has the same characters as any of the characters present in column 4 and 5 of file1 then those lines of file1 and file2... (6 Replies)
Discussion started by: NamS
6 Replies
9. UNIX for Advanced & Expert Users
Hi all,
I have two files as below. I need to compare field 2 of file 1 against field 1 of file 2 and field 5 of file 1 against filed 2 of file 2. If both matches , then create a result file 1 with first file data and if not matches , then create file with first fie data. Please help me in... (1 Reply)
Discussion started by: sivarajb
1 Replies
10. Shell Programming and Scripting
Long time listener first time poster. Hope someone can advise.
I have two files, 1000+ lines in each, two fields in each file.
After performing a sort, what is the best way to find exact matches where field $1 and $2 in file1 are also present in file2 on the same line, then output only those... (6 Replies)
Discussion started by: bstaff
6 Replies
JOIN(1) User Commands JOIN(1)
NAME
join - join lines of two files on a common field
SYNOPSIS
join [OPTION]... FILE1 FILE2
DESCRIPTION
For each pair of input lines with identical join fields, write a line to standard output. The default join field is the first, delimited
by blanks.
When FILE1 or FILE2 (not both) is -, read standard input.
-a FILENUM
also print unpairable lines from file FILENUM, where FILENUM is 1 or 2, corresponding to FILE1 or FILE2
-e EMPTY
replace missing input fields with EMPTY
-i, --ignore-case
ignore differences in case when comparing fields
-j FIELD
equivalent to '-1 FIELD -2 FIELD'
-o FORMAT
obey FORMAT while constructing output line
-t CHAR
use CHAR as input and output field separator
-v FILENUM
like -a FILENUM, but suppress joined output lines
-1 FIELD
join on this FIELD of file 1
-2 FIELD
join on this FIELD of file 2
--check-order
check that the input is correctly sorted, even if all input lines are pairable
--nocheck-order
do not check that the input is correctly sorted
--header
treat the first line in each file as field headers, print them without trying to pair them
-z, --zero-terminated
line delimiter is NUL, not newline
--help display this help and exit
--version
output version information and exit
Unless -t CHAR is given, leading blanks separate fields and are ignored, else fields are separated by CHAR. Any FIELD is a field number
counted from 1. FORMAT is one or more comma or blank separated specifications, each being 'FILENUM.FIELD' or '0'. Default FORMAT outputs
the join field, the remaining fields from FILE1, the remaining fields from FILE2, all separated by CHAR. If FORMAT is the keyword 'auto',
then the first line of each file determines the number of fields output for each line.
Important: FILE1 and FILE2 must be sorted on the join fields. E.g., use "sort -k 1b,1" if 'join' has no options, or use "join -t ''" if
'sort' has no options. Note, comparisons honor the rules specified by 'LC_COLLATE'. If the input is not sorted and some lines cannot be
joined, a warning message will be given.
AUTHOR
Written by Mike Haertel.
REPORTING BUGS
GNU coreutils online help: <http://www.gnu.org/software/coreutils/>
Report join translation bugs to <http://translationproject.org/team/>
COPYRIGHT
Copyright (C) 2017 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.
SEE ALSO
comm(1), uniq(1)
Full documentation at: <http://www.gnu.org/software/coreutils/join>
or available locally via: info '(coreutils) join invocation'
GNU coreutils 8.28 January 2018 JOIN(1)