05-20-2009
Terrific!
Both options did the job for me. Thanks!
NOW, if you want to educate me ( and perhaps a few others) on how to add this in the perl script, so I do not have to run a bash or command line script it would be greatly appreciated.
Cheers
Sm
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
All,
I want to combine multiple files in one file.
Something like what we do on the commad line as follows ->
cat file1 file2 file3 > Main_File.
Can something like this be done in a perl script very efficiently?
Thanks,
Rahul. (1 Reply)
Discussion started by: rahulrathod
1 Replies
2. UNIX for Dummies Questions & Answers
Hi,
I have thousands of files in a directory that have the following 2 formats:
289620178.aln
289620179.aln
289620180.aln
289620183.aln
289620184.aln
289620185.aln
289620186.aln
289620187.aln
289620188.aln
289620189.aln
289620190.aln
289620192.aln....
and:
alnCDS_1.fasta (1 Reply)
Discussion started by: greptastic
1 Replies
3. Shell Programming and Scripting
Hi,
I want to run a Perl script on multiple files, with same name ("Data.txt") but in different directories (eg : 2010_06_09_A/Data.txt, 2010_06_09_B/Data.txt).
I know how to run this perl script on files in the same directory like:
for $i in *.txt
do
perl myscript.pl $i > $i.new... (8 Replies)
Discussion started by: ad23
8 Replies
4. Shell Programming and Scripting
I want to write a Perl script that manipulates multiple files. In the directory, I have files 250.*chr$.ped where * is from 1 to 1000 and $ is from 1-22 for a total of 22 x 10,000 = 22,000 files.
I want to write a script that only manipulates files 250.1chr*.ped where * is from 1 to 22.... (10 Replies)
Discussion started by: evelibertine
10 Replies
5. Programming
Hi every one,
Please excuse me if any grammatical mistakes is there.
I have multiple xml files in one directory, I need to create multiple XML files into one XML file.example files like this</p>
file1:bvr.xml
... (0 Replies)
Discussion started by: veerubiji
0 Replies
6. Shell Programming and Scripting
I am new for Perl I want to ask one question. I have around 50 custom packages which i am using in my Perl script. I want to import all .pm packages in my Perl script in an easy way. Right now i have to import each package individually. So Is there any way to do so??
Right Now i am doing like:
... (1 Reply)
Discussion started by: Navrattan Bansa
1 Replies
7. Shell Programming and Scripting
Hi
I have 100 files under file A labled 1.txt 2.txt.....100.txt(made up name)
I have 1 files under file B labled name.txt
How can i run the same perl script on 100 files and file name.txt
I want to run
perl script.pl A/1.txt B/name.txt
perl script.pl A/2.txt B/name.txt
.......
perl... (3 Replies)
Discussion started by: grace_shen
3 Replies
8. UNIX for Dummies Questions & Answers
How can I run the following command on multiple files and print out the corresponding multiple files.
perl script.pl genome.gff 1.txt > 1.gff
However, there are multiples files of 1.txt, from 1----100.txt
Thank you so much.
No duplicate posting! Continue here. (0 Replies)
Discussion started by: grace_shen
0 Replies
9. Shell Programming and Scripting
Hi Experts,
I am querying backup status results for multiple databases and getting each and every database result in one csv file. so i need to combine all csv files in one excel file with separate tabs. I am not familiar with perl script so i am using shell script.
Could anyone please... (4 Replies)
Discussion started by: ramakrk2
4 Replies
10. Shell Programming and Scripting
We have the data looks like below in a log file.
I want to generat files based on the string between two hash(#) symbol like below
Source:
#ext1#test1.tale2 drop
#ext1#test11.tale21 drop
#ext1#test123.tale21 drop
#ext2#test1.tale21 drop
#ext2#test12.tale21 drop
#ext3#test11.tale21 drop... (5 Replies)
Discussion started by: Sanjeev G
5 Replies
LEARN ABOUT DEBIAN
nqs2pbs
nqs2pbs(1B) PBS nqs2pbs(1B)
NAME
nqs2pbs - convert NQS job scripts to PBS
SYNOPSIS
nqs2pbs nqs_script [pbs_script]
DESCRIPTION
This utility converts a existing NQS job script to work with PBS and NQS. The existing script is copied and PBS directives, #PBS , are
inserted prior to each NQS directive #QSUB or #@$ , in the original script.
Certain NQS date specification and options are not supported by PBS. A warning message will be displayed indicating the problem and the
line of the script on which it occurred.
If any unrecognizable NQS directives are encountered, an error message is displayed. The new PBS script will be deleted if any errors
occur.
OPERANDS
nqs_script
Specifies the file name of the NQS script to convert. This file is not changed.
pbs_script
If specified, it is the name of the new PBS script. If not specified, the new file name is nqs_script.new .
NOTES
Converting NQS date specifications to the PBS form may result in a warning message and an incompleted converted date. PBS does not support
date specifications of "today", "tomorrow", or the name of the days of the week such as "Monday". If any of these are encountered in a
script, the PBS specification will contain only the time portion of the NQS specification, i.e. #PBS -a hhmm[.ss]. It is suggested that
you specify the execution time on the qsub command line rather than in the script.
Note that PBS will interpret a time specification without a date in the following way:
- If the time specified has not yet been reached, the job will become eligible to run at that time today.
- If the specified time has already passed when the job is submitted, the job will become eligible to run at that time tomorrow.
PBS does not support time zone identifiers. All times are taken as local time.
SEE ALSO
qsub(1B)
Local nqs2pbs(1B)