Sponsored Content
Top Forums Shell Programming and Scripting perl script on multiple files Post 302317993 by aritakum on Wednesday 20th of May 2009 12:59:08 PM
Old 05-20-2009
perl script on multiple files

I have a script that runs on one file (at a time).
like this:
$> perl myscript.pl filename > output

How can I run it on >6000 files and have the output sent out into slightly modified file name
$> perl myscript 6000files> output6000files.new extension

Thanks in anticipation
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Combining Multiple files in one in a perl script

All, I want to combine multiple files in one file. Something like what we do on the commad line as follows -> cat file1 file2 file3 > Main_File. Can something like this be done in a perl script very efficiently? Thanks, Rahul. (1 Reply)
Discussion started by: rahulrathod
1 Replies

2. UNIX for Dummies Questions & Answers

Foreach loop to run a perl script on multiple files

Hi, I have thousands of files in a directory that have the following 2 formats: 289620178.aln 289620179.aln 289620180.aln 289620183.aln 289620184.aln 289620185.aln 289620186.aln 289620187.aln 289620188.aln 289620189.aln 289620190.aln 289620192.aln.... and: alnCDS_1.fasta (1 Reply)
Discussion started by: greptastic
1 Replies

3. Shell Programming and Scripting

Run perl script on files in multiple directories

Hi, I want to run a Perl script on multiple files, with same name ("Data.txt") but in different directories (eg : 2010_06_09_A/Data.txt, 2010_06_09_B/Data.txt). I know how to run this perl script on files in the same directory like: for $i in *.txt do perl myscript.pl $i > $i.new... (8 Replies)
Discussion started by: ad23
8 Replies

4. Shell Programming and Scripting

Writing a Perl Script that processes multiple files

I want to write a Perl script that manipulates multiple files. In the directory, I have files 250.*chr$.ped where * is from 1 to 1000 and $ is from 1-22 for a total of 22 x 10,000 = 22,000 files. I want to write a script that only manipulates files 250.1chr*.ped where * is from 1 to 22.... (10 Replies)
Discussion started by: evelibertine
10 Replies

5. Programming

help need in the perl script that create one xml file form multiple files.

Hi every one, Please excuse me if any grammatical mistakes is there. I have multiple xml files in one directory, I need to create multiple XML files into one XML file.example files like this</p> file1:bvr.xml ... (0 Replies)
Discussion started by: veerubiji
0 Replies

6. Shell Programming and Scripting

How can I do one liner import multiple custom .pm files in my perl script?

I am new for Perl I want to ask one question. I have around 50 custom packages which i am using in my Perl script. I want to import all .pm packages in my Perl script in an easy way. Right now i have to import each package individually. So Is there any way to do so?? Right Now i am doing like: ... (1 Reply)
Discussion started by: Navrattan Bansa
1 Replies

7. Shell Programming and Scripting

How to run perl script on multiple files of two directories?

Hi I have 100 files under file A labled 1.txt 2.txt.....100.txt(made up name) I have 1 files under file B labled name.txt How can i run the same perl script on 100 files and file name.txt I want to run perl script.pl A/1.txt B/name.txt perl script.pl A/2.txt B/name.txt ....... perl... (3 Replies)
Discussion started by: grace_shen
3 Replies

8. UNIX for Dummies Questions & Answers

Run one script on multiple files and print out multiple files.

How can I run the following command on multiple files and print out the corresponding multiple files. perl script.pl genome.gff 1.txt > 1.gff However, there are multiples files of 1.txt, from 1----100.txt Thank you so much. No duplicate posting! Continue here. (0 Replies)
Discussion started by: grace_shen
0 Replies

9. Shell Programming and Scripting

Tabbed multiple csv files into one single excel file with using shell script not perl

Hi Experts, I am querying backup status results for multiple databases and getting each and every database result in one csv file. so i need to combine all csv files in one excel file with separate tabs. I am not familiar with perl script so i am using shell script. Could anyone please... (4 Replies)
Discussion started by: ramakrk2
4 Replies

10. Shell Programming and Scripting

In PErl script: need to read the data one file and generate multiple files based on the data

We have the data looks like below in a log file. I want to generat files based on the string between two hash(#) symbol like below Source: #ext1#test1.tale2 drop #ext1#test11.tale21 drop #ext1#test123.tale21 drop #ext2#test1.tale21 drop #ext2#test12.tale21 drop #ext3#test11.tale21 drop... (5 Replies)
Discussion started by: Sanjeev G
5 Replies
HWLOC-PS(1)							       hwloc							       HWLOC-PS(1)

NAME
hwloc-ps - List currently-running processes or threads that are bound SYNOPSIS
hwloc-ps [options] OPTIONS
-a list all processes, even those that are not bound to any specific part of the machine. -p --physical report OS/physical indexes instead of logical indexes -l --logical report logical indexes instead of physical/OS indexes (default) -c --cpuset show process bindings as cpusets instead of objects. -t --threads show threads inside processes. If -a is given as well, list all threads within each process. Otherwise, show all threads inside each process where at least one thread is bound. --whole-system Do not consider administration limitations. --pid-cmd <cmd> Append the output of the given command to each PID line. For each displayed process ID, execute the command <cmd> <pid> and append the first line of its output to the regular hwloc-ps line. DESCRIPTION
By default, hwloc-ps lists only those currently-running processes that are bound. If -t is given, processes that are not bound but contain at least one bound thread are also displayed, as well as all their threads. hwloc-ps displays process identifier, command-line and binding. The binding may be reported as objects or cpusets. By default, process bindings are restricted to the currently available topology. If some processes are bound to processors that are not available to the current process, they are ignored unless --whole-system is given. The output is a plain list. If you wish to annotate the hierarchical topology with processes so as to see how they are actual distributed on the machine, you might want to use lstopo --ps instead (which also only shows processes that are bound). The -a switch can be used to show all processes, if desired. EXAMPLES
If a process is bound, it appears in the default output: $ utils/hwloc-ps 4759 Core:0 myprogram If a process is not bound but 3 of his 4 threads are bound, it only appears in the thread-aware output: $ utils/hwloc-ps $ utils/hwloc-ps -t 4759 Machine:0 myprogram 4759 Machine:0 4761 PU:0 4762 PU:2 4765 PU:1 To display the binding of already running MPI processes (launched by Open MPI) and append their MPI rank (in MPI_COMM_WORLD) to each line: $ utils/hwloc-ps --pid-cmd myscript 29093 L1dCache:0 myprogram OMPI_COMM_WORLD_RANK=0 29094 L1dCache:2 myprogram OMPI_COMM_WORLD_RANK=1 29095 L1dCache:1 myprogram OMPI_COMM_WORLD_RANK=2 29096 L1dCache:3 myprogram OMPI_COMM_WORLD_RANK=3 where myscript is a bash script doing: #!/bin/sh cat /proc/$1/environ 2>/dev/null | xargs --null --max-args=1 echo | grep OMPI_COMM_WORLD_RANK SEE ALSO
hwloc(7), lstopo(1), hwloc-calc(1), hwloc-distrib(1) 1.7 Apr 07, 2013 HWLOC-PS(1)
All times are GMT -4. The time now is 03:39 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy