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Special Forums UNIX and Linux Applications High Performance Computing Benchmarking a Beowulf Cluster Post 302315636 by otheus on Wednesday 13th of May 2009 02:53:06 AM
Old 05-13-2009
As I suspected, your administrator did not give you the MPI version; rather he compiled it for the threading model. Show your administrator the output from step 3 and kindly ask him/her to recompile it for you with the OpenMPI.

After that, everything should work fine.
 

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MPI_Init(3)							      LAM/MPI							       MPI_Init(3)

NAME
MPI_Init - Initialize the MPI execution environment SYNOPSIS
#include <mpi.h> int MPI_Init(int *pargc, char ***pargv) INPUT PARAMETERS
pargc - Pointer to the number of arguments pargv - Pointer to the argument vector NOTES
MPI specifies no command-line arguments but does allow an MPI implementation to make use of them. LAM/MPI neither uses nor adds any values to the argc and argv parameters. As such, it is legal to pass NULL for both argc and argv in LAM/MPI. Instead, LAM/MPI relies upon the mpirun command to pass meta-information between nodes in order to start MPI programs (of course, the LAM daemons must have previously been launched with the lamboot command). As such, every rank in MPI_COMM_WORLD will receive the argc and argv that was specified with the mpirun command (either via the mpirun command line or an app schema) as soon as main begins. See the mpirun (1) man page for more information. If mpirun is not used to start MPI programs, the resulting process will be rank 0 in MPI_COMM_WORLD , and MPI_COMM_WORLD will have a size of 1. This is known as a "singleton" MPI. It should be noted that LAM daemons are still used for singleton MPI programs - lamboot must still have been successfully executed before running a singleton process. LAM/MPI takes care to ensure that the normal Unix process model of execution is preserved: no extra threads or processes are forked from the user's process. Instead, the LAM daemons are used for all process management and meta-environment information. Consequently, LAM/MPI places no restriction on what may be invoked before MPI_Init* or after MPI_Finalize ; this is not a safe assumption for those attempting to write portable MPI programs - see "Portability Concerns", below. MPI mandates that the same thread must call MPI_Init or MPI_Init_thread and MPI_Finalize . Note that the Fortran binding for this routine has only the error return argument ( MPI_INIT(ierror) ). Because the Fortran and C versions of MPI_Init are different, there is a restriction on who can call MPI_Init . The version (Fortran or C) must match the main program. That is, if the main program is in C, then the C version of MPI_Init must be called. If the main program is in Fortran, the Fortran version must be called. On exit from this routine, all processes will have a copy of the argument list. This is not required by the MPI standard, and truely por- table codes should not rely on it. This is provided as a service by this implementation (an MPI implementation is allowed to distribute the command line arguments but is not required to). SIGNALS USED
The LAM implementation of MPI uses, by default, SIGUSR2 . This may be changed when LAM is compiled, however, with the --with-signal command line switch to LAM's configure script. Consult your system administrator to see if they specified a different signal when LAM was installed. LAM/MPI catches several signals for the purpose of printing error messages before invoking the next signal handler. That is, LAM "chains" its signal handler to be executed before the signal handler that was already set. This scheme prevents nodes (remote nodes, especially) from silently dying and hanging the remaining MPI ranks because of unfinished communications - a very confusing situation when debugging parallel programs. Therefore, it is safe for users to set their own signal handlers. If they wish the LAM signal handlers to be executed as well, users should set their handlers before MPI_Init* is invoked. If users do not wish to have LAM catch signals (a bad idea!), they should set their handlers after MPI_Init* is invoked. LAM/MPI catches the following signals SIGSEGV , SIGBUS , SIGFPE , SIGILL All other signals are unused by LAM/MPI, and will be passed to their respective signal handlers. PORTABILITY CONCERNS
Portable MPI programs cannot assume the same process model that LAM uses (i.e., essentially the same as POSIX). MPI does not mandate any- thing before MPI_Init (or MPI_Init_thread ), nor anything after MPI_Finalize executes. Different MPI implementations make different assumptions; some fork auxillary threads and/or processes to "help" with the MPI run-time environment (this may interfere with the con- structors and destructors of global C++ objects, particularly in the case where using atexit() or onexit(), for example). As such, if you are writing a portable MPI program, you cannot make the same assumptions that LAM/MPI does. In general, it is safest to call MPI_Init (or MPI_Init_thread ) as soon as possible after main begins, and call MPI_Finalize immediately before the program is supposed to end. Consult the documentation for each MPI implementation for their intialize and finalize behavior. ERRORS
If an error occurs in an MPI function, the current MPI error handler is called to handle it. By default, this error handler aborts the MPI job. The error handler may be changed with MPI_Errhandler_set ; the predefined error handler MPI_ERRORS_RETURN may be used to cause error values to be returned (in C and Fortran; this error handler is less useful in with the C++ MPI bindings. The predefined error handler MPI::ERRORS_THROW_EXCEPTIONS should be used in C++ if the error value needs to be recovered). Note that MPI does not guarantee that an MPI program can continue past an error. All MPI routines (except MPI_Wtime and MPI_Wtick ) return an error value; C routines as the value of the function and Fortran routines in the last argument. The C++ bindings for MPI do not return error values; instead, error values are communicated by throwing exceptions of type MPI::Exception (but not by default). Exceptions are only thrown if the error value is not MPI::SUCCESS . Note that if the MPI::ERRORS_RETURN handler is set in C++, while MPI functions will return upon an error, there will be no way to recover what the actual error value was. MPI_SUCCESS - No error; MPI routine completed successfully. MPI_ERR_OTHER - This error class is associated with an error code that indicates that an attempt was made to call MPI_INIT a second time. MPI_INIT may only be called once in a program. MPI_ERR_OTHER - Other error; use MPI_Error_string to get more information about this error code. SEE ALSO
MPI_Init_thread, MPI_Finalize, lamboot, mpirun, lamhalt MORE INFORMATION
For more information, please see the official MPI Forum web site, which contains the text of both the MPI-1 and MPI-2 standards. These documents contain detailed information about each MPI function (most of which is not duplicated in these man pages). http://www.mpi-forum.org/ ACKNOWLEDGEMENTS
The LAM Team would like the thank the MPICH Team for the handy program to generate man pages ("doctext" from ftp://ftp.mcs.anl.gov/pub/sow- ing/sowing.tar.gz ), the initial formatting, and some initial text for most of the MPI-1 man pages. LOCATION
init.c LAM
/MPI 6.5.8 11/10/2002 MPI_Init(3)
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