Hi all
I need to input values in a .csv file into my Oracle table running in Unix, I wonder what would be the command to do so...
The values are recorded in an excel file and I tried using a formatted text file to do so but failed because one of the field is simply too large to fit in the... (5 Replies)
Hi all
I need to input values in a .csv file into my Oracle table running in Unix, I wonder what would be the command to do so...
The values are recorded in an excel file and I tried using a formatted text file to do so but failed because one of the field is simply too large to fit in the... (4 Replies)
Hi,
how can i make a comma seperated output summary.
i attached the sample log file.
I have to capture these data in the log file.
Arcotid
Time Stamp, Username, Success, Failure, Error Code, Error Message
In the log snippet the userID can be found in-
Code
Arcot Native Server:... (3 Replies)
Using awk or sed, I'd like to remove leading spaces after a comma and before a right justified number in field 6. Sounds simple but I can't find a solution. Each field's formatting must stay intact.
Input:
40,123456-02,160,05/24/2012,02/13/1977, 10699.15,0
Output:... (5 Replies)
I have a file with the below content
a = test1
b = test2
a = test3
b= test4
c = test6
b = test5
d = test7
d = test9
Need the output to be as follows
a = test1,test3
b = test2, test5
c = test6
d = test7, test9 (4 Replies)
can anyone help me!!!! How to I parse the CSV file
file name : abc.csv (csv file) The above file containing data like
abv,sfs,,hju,',',jkk wff,fst,,rgr,',',rgr ere,edf,erg,',',rgr,rgr I have a requirement like i have to extract different field and assign them into different... (4 Replies)
Discussion started by: J.Jena
4 Replies
LEARN ABOUT DEBIAN
bio::updateableseqi
Bio::UpdateableSeqI(3pm) User Contributed Perl Documentation Bio::UpdateableSeqI(3pm)NAME
Bio::UpdateableSeqI - Descendant of Bio::SeqI that allows updates
SYNOPSIS
See Bio::SeqI for most of the documentation. See the documentation of the methods for further details.
DESCRIPTION
Bio::UpdateableSeqI is an interface for Sequence objects which are expected to allow users to perform basic editing functions
(update/delete) on their component SeqFeatures.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - David Block
Email dblock@gene.pbi.nrc.ca
CONTRIBUTORS
Ewan Birney forced me to this...
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
delete_feature
Title : delete_feature
Usage : my $orphanlist=$self->delete_feature($feature,$transcript,$gene);
Function: deletes the specified $feature from the given transcript, if $transcript is sent and exists and $feature is a feature of $transcript,
or from $gene if the $feature is a feature of $gene, or from $self if $transcript and $gene are not sent. Keeps track of the features
of the $gene object that may be left as orphans and returns them as a listref.
Example : I want to delete transcript 'abc' of gene 'def', with three exons, leaving only transcript 'ghi' with two exons.
This will leave exons 1 and 3 part of 'ghi', but exon 2 will become an orphan.
my $orphanlist=$seq->delete_feature($transcript{'abc'},undef,$gene{'def'});
$orphanlist is a reference to a list containing $exon{'2'};
Returns : a listref of orphaned features after the deletion of $feature (optional)
Args : $feature - the feature to be deleted
$transcript - the transcript containing the $feature, so that a $feature can be removed from only one transcript when there are multiple
transcripts in a gene.
$gene - the gene containing the $transcript and/or the $feature
perl v5.14.2 2012-03-02 Bio::UpdateableSeqI(3pm)