Hi,
I need to create a report in unix by moving to specified lines and specified positions and print some strings etc..
for eg: i need to print a string on 15th line and 7th position of a file.
Please suggest.
Thanks,
Mohan (3 Replies)
I have the following text format in a file which lists the question first and then 5 choices
after that the explanantion and finally the answer.
1.The amount of time it takes for most of a worker’s occupational knowledge and skills to become
obsolete has been declining because of the... (2 Replies)
So say I have the file:
john
london
24
male
========
jane
london
22
female
========
mike
23
========
Bob
how do i get the information i need on one line as such: (5 Replies)
I get a file which has all its content in a single row.
The file contains xml data containing 3000 records, but all in a single row, making it difficult for Unix to Process the file.
I decided to insert a new line character at all occurrences of a particular string in this file (say replacing... (4 Replies)
Hi all,
I have a question..
Here is my requirement..I have 500 files in a path say /a/b/c
I have some numbers in a file which are comma seperated...and I wanted to check if the numbers are present in the FileName in the path /a/b/c..if the number is there in the file that is fine..but if... (1 Reply)
Hi friends ,
I want to know how does a shell script recognize the end of a line? . i have hunddres of proccedure to test where i want to ingnore the comments which starts with "--" .. it can start from the middle of the lines also. for example::
select * from table1; -- getting... (5 Replies)
Hi all!
I need some help in changing a text file. I have the following text file:
1,050406259214736,00010,5000,MZM,V050,20131231,EMIG
2,Available,20061126T10:40:15,vs,,
2,Used,20110813T12:32:35,,825351585,1411012901443027
1,050410256649750,00010,5000,MZM,V050,20131231,EMIG
... (2 Replies)
Hmmm I think I found the correct subforum to ask my question...
I have some text files that I prepared in vi some time ago, and now I want to open and edit them with Windows Notepad. I don't have a Unix terminal at the moment so I need to do the conversion in Windows. Is there a way to do this?... (1 Reply)
Hi all,
I have some text files that I prepared in vi some time ago, and now I want to open and edit them with Windows Notepad. I don't have a Unix terminal at the moment so I need to do the conversion in Windows. Is there a way to do this? Or just reinsert thousands of line breaks again :eek: ? (2 Replies)
Hi,
I have a file which is an extract of jil codes of all autosys jobs in our server.
Sample jil code:
**************************
permission:gx,wx
date_conditions:yes
days_of_week:all
start_times:"05:00"
condition: notrunning(appDev#box#ProductLoad)... (1 Reply)
Discussion started by: raghavendra
1 Replies
LEARN ABOUT DEBIAN
probalign
PROBALIGN(1) User Commands PROBALIGN(1)NAME
probalign - Align sequences in MFAFILE(s) and print result to standard output
DESCRIPTION
PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the standard output. Written by Satish Chikkagoudar and
Usman Roshan using code from PROBCONS version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein).
PROBALIGN 1.4 comes with ABSOLUTELY NO WARRANTY. This is free software, and you are welcome to redistribute it under certain conditions.
See the README file for details.
Usage:
probalign [OPTION]... [MFAFILE]...
Description:
Align sequences in MFAFILE(s) and print result to standard output
-clustalw
use CLUSTALW output format instead of MFA
-v, --verbose
report progress while aligning (default: off)
-a, --alignment-order
print sequences in alignment order rather than input order (default: off)
-T, -temperature
Sets the thermodynamic temperature parameter
(default: 5 (for protein data mode), 1 ( for nucleotide data mode)).
-score_matrix, --score_matrix
Sets the type of scoring matrix used to calculate the posterior probabilities (default: gonnet_160, representing gonnet 160, refer
README for details)
-go, --gap-open
This option can be used to specify the gap open parameter. The default for Gonnet 160 (protein) is 22 and nucleotide (simple matrix)
is 4.
-ge, --gap-extension
This option can be used to specify the gap extension parameter. The default for Gonnet 160 (protein) is 1 and nucleotide (simple
matrix) is 0.25.
-nuc
Specify this option to indicate that inputted sequences are nucleotide sequences
-prot
Specify this option to indicate that inputted sequences are protein sequences [DEFAULT]
-showPP
Outputs the posterior probabilities of alignment columns as a new sequence named Posterior Probabilities (The probability values are
scaled to be between integers between 0 and 9).
probalign 1.4 May 2011 PROBALIGN(1)