Hi All,
I have 2 issues while working with file.
1. I have 2 delimited(~) files. I want to extract column numbner 3 from file1 and column number 8 from file2 and paste it into file3. I have tried using cut, but not able to get answer.
2. i have 2 filxed-width file. I wanted to do same... (1 Reply)
Hi, i have a filename CRED20102009.txt in a server
20102009 is the date of the file ddmmaaaa format
the complete route is
/dprod/informatica/Fuentes/CRED20102009.csv
i want to extract the date to create a new file named Parameters.txt
I need to create Parameters.txt with this... (6 Replies)
Hi to all,
I got this content/pattern from file http.log.20110808.gz
mail1 httpd: Account Notice: close igchung@abc.com 2011/8/7 7:37:36 0:00:03 0 0 1
mail1 httpd: Account Information: login sastria9@abc.com proxy sid=gFp4DLm5HnU
mail1 httpd: Account Notice: close sastria9@abc.com... (16 Replies)
Hi everyone
I am very new at awk and to me the task I need to get done is very very challenging... Nevertheless, after admiring how fast and elegant issues are being solved here I am sure this is my best chance.
I have a 2D data file (input file is a plain tab-delimited text file). The first... (1 Reply)
I have a logfile from which i need to extract certain pattern based on the time but the problem here is the time is not same for all days.
Input file:
Mon 12:34:56 abvjingjgg
Mon 12:34:57 ofjhjgjhgh
.
.
.
Mon 22:30:00 kkfng
.
.
.
Mon 23:12:23 kjgsdafhkljf
.
.
.
Tue 01:04:54... (8 Replies)
Hello All,
I have a file like this
Define schema flat_file_schema
(
a varchar(20)
,b varchar(30)
,c varchar(40)
);
(Insert into table (
a
,b
,c
) values
(
1
,2
,3
); (4 Replies)
I have number in file which contains date and serial number:
2013101000.
The last two digits are serial number (00). So maximum of serial number is 100.
After reaching 100 it becomes 00 with incrementing 10 which is day with max 31.
after reaching 31 it becomes 00 and increments 10... (31 Replies)
Hello,
Each time a user log on to host, they receive below error:
-sh: /tmp/outfile: cannot create
Example:
$ ssh host
user@host's password:
Last login: Fri Dec 4 08:17:28 2015 from client.ref
|-----------------------------------------------------------------|
-sh:... (2 Replies)
I have a long list of lines in a txt file which i'm only interested to extract the list of domains like the colored ones.
domain.com domain.com/page codes $.09
domain.org domain.org/page2/ codes $0.10
domain.net domain.net/page03 codes $0.05
domain.info ... (3 Replies)
I am having one problem as stated below
Problem Description
I am having some "sv" extension files , I am using "glob" to extract the matching files , Now in these matching files , I need to split them and extract the elements and create different lists.
For example
set files
This... (1 Reply)
Discussion started by: kshitij
1 Replies
LEARN ABOUT DEBIAN
bio::taxonomy::factoryi
Bio::Taxonomy::FactoryI(3pm) User Contributed Perl Documentation Bio::Taxonomy::FactoryI(3pm)NAME
Bio::Taxonomy::FactoryI - interface to define how to access NCBI Taxonoy
DESCRIPTION
NB: This module has been deprecated.
$factory->fetch is a general method to fetch Taxonomy by either NCBI taxid or any types of names.
$factory->fetch_parent($taxonomy), returns a Taxonomy that is one-step higher rank of the taxonomy specified as argument.
$factory->fetch_children($taxonomy), reports an array of Taxonomy those are one-step lower rank of the taxonomy specified as the argument.
AUTHOR - Juguang Xiao
juguang@tll.org.sg
CONTRIBUTORS
Additional contributors' names and emails here
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
fetch
Title: fetch
Usage: my $taxonomy = $factory->fetch(-taxon_id => 9605);
my $taxonomy = $factory->fetch(-common_name => 'mammals');
Fuctnion: Fetch taxonomy by taxon_id, common name or scientific name.
Returns: an instance of Bio::Taxonomy
Args: -taxon_id => NCBI taxonomy ID
-common_name => comon name, such as 'human', 'mammals'
-scientifc_name => specitic name, such as 'sapiens', 'Mammalia'
fuzzy_fetch
Title: fuzzy_fetch
Usage: my @taxonomy = $factory->fuzzy_fetch(-name => 'mouse');
Function: Fuzzy fetch by name, or any text information found in DB
Returns: an array reference of Bio::Taxonomy objects
Args: -name => any name, such as common name, variant, scientific name
-description, or -desc => any text information
fetch_parent
Title: fetch_parent
Usage: my $parent_taxonomy = $factory->fetch_parent($taxonomy);
Function: Fetch the parent that is one-rank higher than the argument.
Returns: an instance of Bio::Taxonomy, or undef if the arg is the top one.
Args: a Bio::Taxonomy object.
fetch_children
Title: fetch_children
Usage: my @children_taxonomy = $factory->fetch_children($taxonomy);
Function: Fetch all children those are one-rank lower than the argument.
Returns: an array reference of Bio::Taxonomy objects
Args: a Bio::Taxonomy object.
perl v5.14.2 2012-03-02 Bio::Taxonomy::FactoryI(3pm)