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Special Forums UNIX and Linux Applications High Performance Computing Benchmarking a Beowulf Cluster Post 302313899 by mercthunder on Thursday 7th of May 2009 12:12:08 AM
Old 05-07-2009
Thanks for the response otheus.

Everything seems to be working except the tuning of the HPL.dat. I keep getting processor errors such as:

HPL ERROR from process # 0, on line 419 of function HPL_pdinfo:
>>> Need at least 8 processes for these tests <<<

HPL ERROR from process # 0, on line 621 of function HPL_pdinfo:
>>> Illegal input in file HPL.dat. Exiting ... <

That is trying to run it on 8 cores across 2 nodes. I have also tried your HPL.dat you provided, and i get a similar error except it says Need at least 12 processes.

Do you know what causes these errors. I have a hosts file in the same directory with the names of the two nodes which i wish to run the tests on.

At the command line i am typing:

mpirun -np 8 -machinefile hosts xhpl_em64t

where hosts file has the names:
machine1
machine2

With each machine being a 3ghz QX6850 Core 2 Extreme (Quad Core), 4GB RAM.

The dat file being uses for two nodes is:

Code:
HPLinpack benchmark input file
Innovative Computing Laboratory, University of Tennessee
HPL.out      output file name (if any) 
8            device out (6=stdout,7=stderr,file)
1            # of problems sizes (N)
29184         Ns
1            # of NBs
128           NBs
0            PMAP process mapping (0=Row-,1=Column-major)
1            # of process grids (P x Q)
2            Ps
4            Qs
16.0         threshold
1            # of panel fact
2            PFACTs (0=left, 1=Crout, 2=Right)
1            # of recursive stopping criterium
4            NBMINs (>= 1)
1            # of panels in recursion
2            NDIVs
1            # of recursive panel fact.
1            RFACTs (0=left, 1=Crout, 2=Right)
1            # of broadcast
1            BCASTs (0=1rg,1=1rM,2=2rg,3=2rM,4=Lng,5=LnM)
1            # of lookahead depth
1            DEPTHs (>=0)
2            SWAP (0=bin-exch,1=long,2=mix)
64           swapping threshold
0            L1 in (0=transposed,1=no-transposed) form
0            U  in (0=transposed,1=no-transposed) form
1            Equilibration (0=no,1=yes)
8            memory alignment in double (> 0)
##### This line (no. 32) is ignored (it serves as a separator). ######
0                               Number of additional problem sizes for PTRANS
1200 10000 30000                values of N
0                               number of additional blocking sizes for PTRANS
40 9 8 13 13 20 16 32 64        values of NB



Hoping someone could please help.


Thanks.

Last edited by Neo; 05-11-2009 at 05:16 PM.. Reason: code tags
 

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RDF::Trine::Serializer::NTriples::Canonical(3pm)	User Contributed Perl Documentation	  RDF::Trine::Serializer::NTriples::Canonical(3pm)

NAME
RDF::Trine::Serializer::NTriples::Canonical - Canonical representation of an RDF model VERSION
This document describes RDF::Trine::Serializer::NTriples::Canonical version 1.000 SYNOPSIS
use RDF::Trine::Serializer::NTriples::Canonical; my $serializer = RDF::Trine::Serializer::NTriples->new( onfail=>'truncate' ); $serializer->serialize_model_to_file(FH, $model); DESCRIPTION
This module produces a canonical string representation of an RDF graph. If the graph contains blank nodes, sometimes there is no canonical representation that can be produced. The 'onfail' option allows you to decide what is done in those circumstances: o truncate - drop problematic triples and only serialize a subgraph. o append - append problematic triples to the end of graph. The result will be non-canonical. This is the default behaviour. o space - As with 'append', but leave a blank line separating the canonical and non-canonical portions of the graph. o die - cause a fatal error. Other than the 'onfail' option, this package has exactly the same interface as RDF::Trine::Serializer::NTriples, providing "serialize_model_to_file" and "serialize_model_to_string" methods. This package will be considerably slower than the non-canonicalising serializer though, so should only be used for small to medium-sized graphs, and only when you need canonicalisation (e.g. for side-by-side comparison of two graphs to check they're isomorphic; or creating a canonical representation for digital signing). METHODS
Beyond the methods documented below, this class inherits methods from the RDF::Trine::Serializer::NTriples class. "new ( [ onfail => $rule ] )" Returns a new Canonical N-Triples serializer object. If specified, the value of the 'onfail' argument dictates the handling of blank nodes with no canonical representation. The allowable rule values are 'truncate', 'append', 'space', and 'die', and their respective behaviour is described in "DESCRIPTION" above. "serialize_model_to_file ( $fh, $model )" Serializes the $model to canonical NTriples, printing the results to the supplied filehandle "<$fh">. "serialize_model_to_string ( $model )" Serializes the $model to canonical NTriples, returning the result as a string. BUGS
Please report any bugs or feature requests to through the GitHub web interface at <https://github.com/kasei/perlrdf/issues>. SEE ALSO
Signing RDF Graphs, Jeremey J Carroll, Digital Media Systems Laboratory, HB Laboratories Bristol. HPL-2003-142, 23 July 2003. http://www.hpl.hp.com/techreports/2003/HPL-2003-142.pdf <http://www.hpl.hp.com/techreports/2003/HPL-2003-142.pdf>. RDF::Trine, RDF::Trine::Serializer::NTriples. <http://www.perlrdf.org/>. AUTHOR
Toby Inkster, <tobyink@cpan.org> COPYRIGHT AND LICENSE
Copyright (c) 2010 Toby Inkster This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.1 or, at your option, any later version of Perl 5 you may have available. perl v5.14.2 2012-06-29 RDF::Trine::Serializer::NTriples::Canonical(3pm)
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