Hi,
i am new to awk. I am using csv2pipe script(shown below)
BEGIN { FS=SUBSEP; OFS="|" }
{
result = setcsv($0, ",")
print
}
# setcsv(str, sep) - parse CSV (MS specification) input
# str, the string to be parsed. (Most likely $0.)
# sep, the separator between the values.
#
#... (6 Replies)
Hi,
I have two files , one file with data file with attributes that need to be sent to another file to generate a predefined format.
Example:
File.txt
AP|{SSHA}VEEg42CNCghUnGhCVg==
APVG3|{SSHA}XK|"password"
AP3|{SSHA}XK|"This is test"
....
etc
---------
test.sh has... (1 Reply)
Hi All,
I am hoping someone can help me with some scripting I need to complete using AWK.
I'm trying to process multiple fixed files to generate one concatenated fixed file in a standard format.
The Input file is:-
aaaa bbbbb ccccc 1 xxxx aaa bbb
aaaa bbbbb ccccc 2 abcd aaa CCC... (9 Replies)
I have file which contains gene lines something like this
Transcript Name GO
POPTR_0016s06290.1 98654
POPTR_2158s00200.1 11324
POPTR_0004s22390.1 12897
POPTR_0001s11490.1
POPTR_0016s13950.1 14532
POPTR_0015s05840.1 13455
POPTR_0013s06470.1 12344... (6 Replies)
Hello,
I couldn't find anything on the Forum that would help me to solve this problem. Could any body help me process below data using awk?
I have got two files:
file1:
Worker1: Thomas
Position: Manager
Department: Sales
Salary: $5,000
Worker2: Jason
Position: ... (5 Replies)
I have one input file ABC.txt and one output DEF.txt. After the ABC is processed and created output, I want to rename ABC.txt to ABC.orig and DEF to ABC.txt. Currently when I am doing this, it does not process the input file as it cannot read and write to the same file. How can I achieve this?
... (12 Replies)
I am looking to move matching lines (01 - 07) from File1 and 77 tab the matching string from File2, to File3.txt. I am almost done but
- Currently, script is not printing lines to File3.txt in order.
Thanks a lot.
Any help is appreciated.
Script I am using:
awk 'FNR == NR && ! /^]*$/ {... (9 Replies)
Hi,
I want to compare a value from test file and redirect the o/p value to the same file
input file
250 32000 32 128
Below is my code
awk '{ if ($1 < "300") print $1 > /tmp/test}' test
want to compare 250 < 300 then print 300 to the same place
below is the... (24 Replies)
The below awk improved bu @MadeInGermany, works great as long as the input file has data in it in the below format:
input
chrX 25031028 25031925 chrX:25031028-25031925 ARX 631 18
chrX 25031028 25031925 chrX:25031028-25031925 ARX 632 14... (3 Replies)
Discussion started by: cmccabe
3 Replies
LEARN ABOUT DEBIAN
bio::biblio::person
Bio::Biblio::Person(3pm) User Contributed Perl Documentation Bio::Biblio::Person(3pm)NAME
Bio::Biblio::Person - Representation of a person
SYNOPSIS
$obj = Bio::Biblio::Person->new(-lastname => 'Capek',
-firstname => 'Karel');
#--- OR ---
$obj = Bio::Biblio::Person->new();
$obj->firstname ('Karel');
$obj->lastname ('Capek');
DESCRIPTION
A storage object for a person related to a bibliographic resource.
Attributes
The following attributes are specific to this class (however, you can also set and get all attributes defined in the parent classes):
affiliation
email
firstname
forename
initials
lastname
middlename
postal_address
suffix
SEE ALSO
o OpenBQS home page: http://www.ebi.ac.uk/~senger/openbqs/
o Comments to the Perl client: http://www.ebi.ac.uk/~senger/openbqs/Client_perl.html
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS
Heikki Lehvaslaiho (heikki-at-bioperl-dot-org) Martin Senger (senger@ebi.ac.uk)
COPYRIGHT
Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided "as is" without warranty of any kind.
perl v5.14.2 2012-03-02 Bio::Biblio::Person(3pm)