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Full Discussion: MPI, recovering node
Special Forums UNIX and Linux Applications High Performance Computing MPI, recovering node Post 302307385 by otheus on Wednesday 15th of April 2009 08:01:24 AM
Old 04-15-2009
Sadly, MPI isn't really built for this. It's one of the big drawbacks to MPI in general. I once asked an MPI guru about this and he said "for performance reasons, MPI is designed for a static number of nodes at startup time". Apparently, your gather/scatter aggregate commands won't work right (or efficiently) if you have dynamic node allocation.

But it's been 3 solid years since I heard this, so maybe OpenMPI has made an improvement on the state of affairs. However, at least with MPICH, once a node fails, the whole process tree is supposed to die. If it doesn't, it's because your cluster admin hasn't done things correctly.
 

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MPI_Dims_create(3)							MPI							MPI_Dims_create(3)

NAME
MPI_Dims_create - Creates a division of processors in a cartesian grid SYNOPSIS
int MPI_Dims_create(int nnodes, int ndims, int *dims) INPUT PARAMETERS
nnodes - number of nodes in a grid (integer) ndims - number of cartesian dimensions (integer) IN
/OUT PARAMETER dims - integer array of size ndims specifying the number of nodes in each dimension. A value of 0 indicates that MPI_Dims_create should fill in a suitable value. THREAD AND INTERRUPT SAFETY
This routine is thread-safe. This means that this routine may be safely used by multiple threads without the need for any user-provided thread locks. However, the routine is not interrupt safe. Typically, this is due to the use of memory allocation routines such as malloc or other non-MPICH runtime routines that are themselves not interrupt-safe. NOTES FOR FORTRAN
All MPI routines in Fortran (except for MPI_WTIME and MPI_WTICK ) have an additional argument ierr at the end of the argument list. ierr is an integer and has the same meaning as the return value of the routine in C. In Fortran, MPI routines are subroutines, and are invoked with the call statement. All MPI objects (e.g., MPI_Datatype , MPI_Comm ) are of type INTEGER in Fortran. ERRORS
All MPI routines (except MPI_Wtime and MPI_Wtick ) return an error value; C routines as the value of the function and Fortran routines in the last argument. Before the value is returned, the current MPI error handler is called. By default, this error handler aborts the MPI job. The error handler may be changed with MPI_Comm_set_errhandler (for communicators), MPI_File_set_errhandler (for files), and MPI_Win_set_errhandler (for RMA windows). The MPI-1 routine MPI_Errhandler_set may be used but its use is deprecated. The predefined error handler MPI_ERRORS_RETURN may be used to cause error values to be returned. Note that MPI does not guarentee that an MPI program can continue past an error; however, MPI implementations will attempt to continue whenever possible. MPI_SUCCESS - No error; MPI routine completed successfully. LOCATION
dims_create.c 8/31/2010 MPI_Dims_create(3)
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