Sponsored Content
Top Forums Shell Programming and Scripting Perl Hashes, reading and hashing 2 files Post 302292895 by silkiechicken on Sunday 1st of March 2009 11:54:25 PM
Old 03-02-2009
That's fine and understandable. I read the user agreement that we can't ask you all do our "hw" for us. I have no problem with trying to read up and figure it out, just need some direction on where to look when the Perl help isn't really help. All it was giving me was that I had an unassigned variable?

It's kind of "school work" in that it will ultimately be used for my thesis research. I'm working on my PhD in Molecular and Cellular Biology and our lab has a mouse microarray data set, for which our post doc is currently manually searching though the sets by hand! Background is in bioengineering, so I didn't feel that it was a very efficient method to go data mining. I've put the data though SAMExcel to find the genes from the array which had a 1.4 fold change and have an associated list of affyID's, but need to connect them with the data found in the affyannotation files. I wish Affy would just use the accession numbers so we could look them up on NCBI or MGI directly, but that's the way it is. I'll stop rambling now though. LOL

I'll keep playing with it! Thanks for the help and suggestions!
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

perl: hashes, whiles, and last

hello everyone, i am creating 2 hashes from 2 different files, then looking for the value of one in the value of the other to make a new file. for example: file1: DENV => Denver file2: H224-0A-12 => DENVER if Denver is found in DENVER (case insensitive), a new hash now contains H224-0A-12... (0 Replies)
Discussion started by: effigy
0 Replies

2. Shell Programming and Scripting

How to declare hashes in KSH similar to Perl ?

Hi, Is it possible to delcare hashes in KSH the way we do it in Perl. Like I want to declare something like: fruits="Juicy" fruits="healthy" fruits="sour" echo fruits Ofcourse this piece of code does not work in KSH. Please let me know if there is a way of doing it in KSH. ... (2 Replies)
Discussion started by: tipsy
2 Replies

3. Shell Programming and Scripting

perl hashes question

hi guys im running into a problem here this is my script #!/usr/bin/perl use CGI qw(:standard); $header = "MIME-Version: 1.0\n"; $header .= "Content-type: text/html\n"; $header .= "\n"; #get the point parameter from nhl.html $Team = param("points"); print "$header"; open(INFILE,... (1 Reply)
Discussion started by: lucho_1
1 Replies

4. Shell Programming and Scripting

Hashes help in Perl

Hi, I am stuck at this problem where part of my code would store all the websites that has been accessed by a user. I pull these values from a log file. I want to create a HASH of HASHES ? (Please correct me if this is not the right approach) where I would store all the hits to website with... (4 Replies)
Discussion started by: Dabheeruz
4 Replies

5. Shell Programming and Scripting

perl hash of hashes from database

hi there, I have some database output that looks like this SELECT nic_name,nic_duplex,nic_speed,nic_ip FROM network_table WHERE hostname = "server1" result is this (ive delimited with a pipe for ease of reading) bge0|full|1000|10.32.100.1 bge1|full|1000|11.12.101.7 ... (1 Reply)
Discussion started by: hcclnoodles
1 Replies

6. Shell Programming and Scripting

PERL - printing a hash of hashes to screen

Hi there I have a hash of hashes made up of the following data bge0|100|half|10.36.100.21 bge1|1000|full|10.36.100.22 bge2|1000|full|10.36.100.23 which when i turn into a hash, would look like this inside the system bge0 -> nic_speed -> 100 nic_duplex -> half ... (6 Replies)
Discussion started by: hcclnoodles
6 Replies

7. Shell Programming and Scripting

PERL - another quick hash of hashes question

Hi, sorry, two hash related questions in one day .. but this has got me a bit stuck. I have a mysql database table that kind of looks like this, the table is called "view1" and a snippet of that table (SELECT'ing just rows with serial number 0629AN1200) is below serial nic_name ... (2 Replies)
Discussion started by: hcclnoodles
2 Replies

8. Shell Programming and Scripting

perl: dereferencing a hash of hashes

Hi there, I am trying to dereference my hash of hashes but post dereferencing, it seems to lose its structure I am using Data::dumper to help me anaylise. This is the code im using to build the HoH, (data comes from a file). I have also performed a Dumper on the data structure before and after... (1 Reply)
Discussion started by: rethink
1 Replies

9. Shell Programming and Scripting

Perl : array of hashes help

Hi, I have array of hashes and each key has array like below. @array1 = ( { 'url' => , 'bill' => }, { 'url' => , 'bill' => }, { 'url' => , ... (0 Replies)
Discussion started by: ragilla
0 Replies

10. Shell Programming and Scripting

Perl hash of hashes anonymous array

Hello experts. I'm having problems with a snippet of code. I was hoping to get help/advice to correct. A file that this script parses has changed to the point where I can no longer use a scalar, it looks as though I need to create an array for a hash of hashes below. The first output of... (1 Reply)
Discussion started by: timj123
1 Replies
Gtk2::PageSetup(3pm)					User Contributed Perl Documentation				      Gtk2::PageSetup(3pm)

NAME
Gtk2::PageSetup - wrapper for GtkPageSetup HIERARCHY
Glib::Object +----Gtk2::PageSetup METHODS
pagesetup = Gtk2::PageSetup->new pagesetup = Gtk2::PageSetup->new_from_file ($file_name) o $file_name (localized file name) May croak with a Glib::Error in $@ on failure. Since: gtk+ 2.12 pagesetup = Gtk2::PageSetup->new_from_key_file ($key_file, $group_name) o $key_file (Glib::KeyFile) o $group_name (string or undef) May croak with a Glib::Error in $@ on failure. Since: gtk+ 2.12 double = $setup->get_bottom_margin ($unit) o $unit (Gtk2::Unit) $setup->set_bottom_margin ($margin, $unit) o $margin (double) o $unit (Gtk2::Unit) double = $setup->get_left_margin ($unit) o $unit (Gtk2::Unit) $setup->set_left_margin ($margin, $unit) o $margin (double) o $unit (Gtk2::Unit) $setup->load_file ($file_name) o $file_name (string) May croak with a Glib::Error in $@ on failure. Since: gtk+ 2.14 $setup->load_key_file ($key_file, $group_name) o $key_file (Glib::KeyFile) o $group_name (string or undef) May croak with a Glib::Error in $@ on failure. Since: gtk+ 2.14 pageorientation = $setup->get_orientation $setup->set_orientation ($orientation) o $orientation (Gtk2::PageOrientation) double = $setup->get_page_height ($unit) o $unit (Gtk2::Unit) double = $setup->get_page_width ($unit) o $unit (Gtk2::Unit) double = $setup->get_paper_height ($unit) o $unit (Gtk2::Unit) $setup->set_paper_size_and_default_margins ($size) o $size (Gtk2::PaperSize) papersize = $setup->get_paper_size $setup->set_paper_size ($size) o $size (Gtk2::PaperSize) double = $setup->get_paper_width ($unit) o $unit (Gtk2::Unit) double = $setup->get_right_margin ($unit) o $unit (Gtk2::Unit) $setup->set_right_margin ($margin, $unit) o $margin (double) o $unit (Gtk2::Unit) $setup->to_file ($file_name) o $file_name (localized file name) May croak with a Glib::Error in $@ on failure. Since: gtk+ 2.12 $setup->to_key_file ($key_file, $group_name) o $key_file (Glib::KeyFile) o $group_name (string or undef) Since: gtk+ 2.12 double = $setup->get_top_margin ($unit) o $unit (Gtk2::Unit) $setup->set_top_margin ($margin, $unit) o $margin (double) o $unit (Gtk2::Unit) ENUMS AND FLAGS
enum Gtk2::PageOrientation o 'portrait' / 'GTK_PAGE_ORIENTATION_PORTRAIT' o 'landscape' / 'GTK_PAGE_ORIENTATION_LANDSCAPE' o 'reverse-portrait' / 'GTK_PAGE_ORIENTATION_REVERSE_PORTRAIT' o 'reverse-landscape' / 'GTK_PAGE_ORIENTATION_REVERSE_LANDSCAPE' enum Gtk2::Unit o 'pixel' / 'GTK_UNIT_PIXEL' o 'points' / 'GTK_UNIT_POINTS' o 'inch' / 'GTK_UNIT_INCH' o 'mm' / 'GTK_UNIT_MM' SEE ALSO
Gtk2, Glib::Object COPYRIGHT
Copyright (C) 2003-2011 by the gtk2-perl team. This software is licensed under the LGPL. See Gtk2 for a full notice. perl v5.14.2 2012-05-27 Gtk2::PageSetup(3pm)
All times are GMT -4. The time now is 08:24 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy