02-28-2009
Is the fieldseparator a "^" sign? Better is to post your input file and the desired output.
Regards
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I want to read only one column in "|" delimited file and write that column to a new file.
For Ex:
Input File
1|abc|324|tt
2|efd|11|cbcb
3||1|fg
4|ert|23|88
Output : I want to read column 3 in diff file.
324
11
1
88
Can anyone give me inputs on this ? (2 Replies)
Discussion started by: net
2 Replies
2. UNIX for Dummies Questions & Answers
Hi
Can anyone help me to identify the nth field from a Tab delimited file?
Thanks
Subrat (8 Replies)
Discussion started by: subrat
8 Replies
3. UNIX for Dummies Questions & Answers
Hello Gurus,
I have a text file containing nearly 12,000 tab delimited characters with 4000 rows. If the file size is small, excel can convert the text into coloumns. However, the file that I have is very big. Can some body help me in solving this problem?
The input file example,
... (6 Replies)
Discussion started by: Unilearn
6 Replies
4. UNIX for Dummies Questions & Answers
I have a tab limited text file with 10000+ columns. I want to delete columns 6 through 23, how do I go about doing that? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies
5. UNIX for Dummies Questions & Answers
I'm trying to remove all of the empty lines at the end of a Tab delimited file. They have no data just tabs.
I've tried may things, here are a couple:
sed /^\t.\t/d File1 > File2
sed /^\t{44}/d File1 > File2
What am I missing? (9 Replies)
Discussion started by: SirHenry1
9 Replies
6. UNIX for Dummies Questions & Answers
Hi,
I have a tab delimited document with 18 columns. My file looks like:
comp1000201_c0_seq1 comp1000201_c0 337 183.51 0.00 0.00 0.00 0.00 ---NA--- 337 0 0
-
comp1000297_c0_seq1 comp1000297_c0 612 458.50 ... (1 Reply)
Discussion started by: alisrpp
1 Replies
7. Shell Programming and Scripting
Hello,
I have some tab delimited files that may contain blank columns. I would like to delete the blank columns if they exist. There is no clear pattern for when a blank occurs.
I was thinking of using sed to replace instances of double tab with blank,
sed 's/\t\t//g'
All of the examples... (2 Replies)
Discussion started by: LMHmedchem
2 Replies
8. Shell Programming and Scripting
Hi All ,
I have pipe delimiter file with 11 columns . I need to insert 4 empty columns after column 10 . and After 11 column I need to insert a column which is having the same value for all the rows .
My file
1|2|3|4|5|6|7|8|9|10|11
New file
... (11 Replies)
Discussion started by: Hypesslearner
11 Replies
9. Shell Programming and Scripting
Hi all ,
I have a file having 12 columns tab delimited .
I need to read this file and remove the column 3 and column 4 and insert a word in column 3 as "AVIALABLE "
Is there a way to do this . I am trying like below
Thanks
DJ
cat $FILENAME|awk -F"\t" '{ print $1 "\t... (3 Replies)
Discussion started by: Hypesslearner
3 Replies
10. UNIX for Beginners Questions & Answers
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT DEBIAN
bp_sreformat
BP_SREFORMAT(1p) User Contributed Perl Documentation BP_SREFORMAT(1p)
NAME
bpsreformat - convert sequence formats
DESCRIPTION
This script uses the SeqIO system that allows conversion of sequence formats either sequence data or multiple sequence alignment data. The
name comes from the fact that Sean Eddy's program sreformat (part of the HMMER pkg) already does this. Sean's program tries to guess the
input formats while in our code we currently require your to specify what the input and output formats are and if the data is from a
multiple sequence alignment or from straight sequence files.
Usage:
bpsreformat -if INFORMAT -of OUTFORMAT -i FILENAME -o output.FORMAT
-h/--help Print this help
-if/--informat Specify the input format
-of/--outformat Specify the output format
-i/--input Specify the input file name
(to pass in data on STDIN use minus sign as filename)
-o/--output Specify the output file name
(to pass data out on STDOUT use minus sign as filename)
--msa Specify this is multiple sequence alignment data
--special Will pass on special parameters to the AlignIO/SeqIO
object -- most of these are for Bio::AlignIO objects
Comma separated list of the following
nointerleaved -- for phylip,non-interleaved format
idlinebreak -- for phylip, makes it molphy format
percentages -- for clustalw, show % id per line
perl v5.14.2 2012-03-02 BP_SREFORMAT(1p)