Sponsored Content
Full Discussion: match columns using awk
Top Forums Shell Programming and Scripting match columns using awk Post 302288487 by pistachio on Tuesday 17th of February 2009 11:16:17 AM
Old 02-17-2009
match columns using awk

Hi All,

I need some help in writing a small script using Awk.

My input file has following deatils
A,B,C,D
8239359,8239359,8388125,8388125
8239359,8239359,8388125,8388125
7165981,7165981,8363138,8363138
8283830,8283830,8382987,8382987
8209964,8209964,8367098,8367098
8279587,8279587,8345975,8345975
8283830,8283830,8382987,8382987

My aim is to get the following output
If a=b(any line column) then search (c=d) and print a,b,c,d
please note that the numbers a,b,c,d are not sorted

I would appreciate the help.

Best Regards
Pistachio
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

awk to match a numeric range specified by two columns

Hi Everyone, Here's a snippet of my data: File 1 = testRef2: A1BG - 13208 13284 AAA1 - 34758475 34873943 AAAS - 53701240 53715412File 2 = 42MLN.3.bedS2: 13208 13208 13360 13363 13484 13518 13518My awk script: awk 'NR == FNR{a=$1;next} {$1>=a}{$1<=a}{print... (5 Replies)
Discussion started by: heecha
5 Replies

2. Shell Programming and Scripting

Awk match multiple columns in multiple lines in single file

Hi, Input 7488 7389 chr1.fa chr1.fa 3546 9887 chr5.fa chr9.fa 7387 7898 chrX.fa chr3.fa 7488 7389 chr21.fa chr3.fa 7488 7389 chr1.fa chr1.fa 3546 9887 chr9.fa chr5.fa 7898 7387 chrX.fa chr3.fa Desired Output 7488 7389 chr1.fa chr1.fa 2 3546 9887 chr5.fa chr9.fa 2... (2 Replies)
Discussion started by: jacobs.smith
2 Replies

3. UNIX for Dummies Questions & Answers

Awk match on columns and delete line

Hi, I have a file like this a 1 2 b 2 2 c 2 3 d 4 5 f 5 6 output a 1 2 c 2 3 d 4 5 f 5 6 Basically, I want to delete the whole line if $2 and $3 are the same. Thanks (5 Replies)
Discussion started by: jacobs.smith
5 Replies

4. Shell Programming and Scripting

match two key columns in two files and print output (awk)

I have two files... file1 and file2. Where columns 1 and 2 of file1 match columns 1 and 2 of file2 I want to create a new file that is all file1 + columns 3 and 4 of file2 :b: Many thanks if you know how to do this.... :b: file1 31-101 106 0 92 31-101 106 29 ... (2 Replies)
Discussion started by: pelhabuan
2 Replies

5. Shell Programming and Scripting

Match on columns and replace other columns

Hi Friends, I have the following input file cat input chr1 100 200 0.1 0.2 na 1 na nd chr1 105 200 0.1 0.2 1 1 na 98 chr1 110 290 nf 1 na nd na 1 chr2 130 150 12 3 na 1 na 1 chr3 450 600 nf nf na 10 na nd chr4 300 330 1 1 10 11 23 34 My requirement is 1. If $6 is na make $7 nd and... (2 Replies)
Discussion started by: jacobs.smith
2 Replies

6. Shell Programming and Scripting

Match files based on either of the two columns awk

Dear Shell experts, I have 2 files with structure: File 1: ID and count head test_GI_count1.txt 1000094 2 10039307 1 10039641 1 10047177 11 10047359 1 1008555 2 10120302 1 10120672 13 10121776 1 10121865 32 And 2nd file: head Protein_gi_GeneID_symbol.txt protein_gi GeneID... (11 Replies)
Discussion started by: smitra
11 Replies

7. Shell Programming and Scripting

Evaluate 2 columns, add sum IF two columns match on two rows

Hi all, I know this sounds suspiciously like a homework course; but, it is not. My goal is to take a file, and match my "ID" column to the "Date" column, if those conditions are true, add the total number of minutes worked and place it in this file, while not printing the original rows that I... (6 Replies)
Discussion started by: mtucker6784
6 Replies

8. Shell Programming and Scripting

awk pattern match not printing desired columns

Hi all, I'm trying to match the following two files with the code below: awk -F, 'NR==FNR {a=$0; next} ($12,$4) in a {print $12,$1,a}' OFS="," file4.csv file3.csv but the code does not print the entire row from file4 in addition to column 12 and 1 of file3. file4: o,c,q,co,ov,b... (1 Reply)
Discussion started by: bkane3
1 Replies

9. Shell Programming and Scripting

Request: How to Parse dynamic SQL query to pad extra columns to match the fixed number of columns

Hello All, I have a requirement in which i will be given a sql query as input in a file with dynamic number of columns. For example some times i will get 5 columns, some times 8 columns etc up to 20 columns. So my requirement is to generate a output query which will have 20 columns all the... (7 Replies)
Discussion started by: vikas_trl
7 Replies

10. UNIX for Beginners Questions & Answers

Data match 2 files based on first 2 columns matching only and join if match

Hi, i have 2 files , the data i need to match is in masterfile and i need to pull out column 3 from master if column 1 and 2 match and output entire row to new file I have tried with join and awk and i keep getting blank outputs or same file is there an easier way than what i am... (4 Replies)
Discussion started by: axis88
4 Replies
COMM(1) 						    BSD General Commands Manual 						   COMM(1)

NAME
comm -- select or reject lines common to two files SYNOPSIS
comm [-123f] file1 file2 DESCRIPTION
The comm utility reads file1 and file2, which should be sorted lexically, and produces three text columns as output: lines only in file1; lines only in file2; and lines in both files. The filename ``-'' means the standard input. The following options are available: -1 Suppress printing of column 1. -2 Suppress printing of column 2. -3 Suppress printing of column 3. -f Fold case in line comparisons. Each column will have a number of tab characters prepended to it equal to the number of lower numbered columns that are being printed. For example, if column number two is being suppressed, lines printed in column number one will not have any tabs preceding them, and lines printed in column number three will have one. comm assumes that the files are lexically sorted; all characters participate in line comparisons. EXIT STATUS
comm exits 0 on success, >0 if an error occurred. SEE ALSO
cmp(1), diff(1), sort(1), uniq(1) STANDARDS
The comm utility conforms to IEEE Std 1003.2-1992 (``POSIX.2''). BSD
June 6, 1993 BSD
All times are GMT -4. The time now is 11:18 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy