Hi All,
I was wondering if anyone knew how to dynamically change the FS in awk to accept vairiable containing a field separator. the current code is as below and does not work when i introduce the dynamic FS change :-(
validate_source_file()
{
source_file=$1
... (2 Replies)
Hi. I'd appreciate if I can get some direction in this issue to get me going.
Datafile1:
-About 4000 records, I have to update field#4 in selected records based on a match in the key field (Field#1).
-Field #1 is the key field (servername) . # of Fields may vary
# comment
server1 bbb ccc... (2 Replies)
I have 100 files in a directory , all the files have a word "error" and they are created in different date . Now I would like to change the word from "error" to "warning" , and keep the date of the files ( that means do not change the file creation date after change the word ) , can advise what can... (0 Replies)
I have 100 files in a directory , all the files have a word "error" and they are created in different date . Now I would like to change the word from "error" to "warning" , and keep the date of the files ( that means do not change the file creation date after change the word ) , can advise what can... (7 Replies)
Hi,
i have a file input.txt
Continent North America
Country USA Capital Washington D.C.
Country Canada Capital Ottawa
Continent South America
Country Argentina Capital Buenos Aires
Country Brazil Capital Brasília
Coutry Colombia Capital Bogotá
and i want to get an output.txt
... (3 Replies)
Hi Experts,
i need to change delimiter from tab to ","
sample test file
cat test
A0000368 A29938511 072569352 5 Any 2 for £1.00 BUTCHERS|CAT FOOD|400G Sep 12 2012 12:00AM Jan 5 2014 11:59PM Sep 7 2012 12:00AM M 2.000 group 5
... (2 Replies)
In the below awk in the first step I default Classification NF-1 to VUS. Next, I am trying to change the value of Classification (NF) to whatever CLINSIG (NF-1) is. If there is only one condition everything works great, but if there are two conditions it does not work. Is the syntax used... (4 Replies)
In the awk below I am trying to copy the entire contents of $6 there may be multiple values seperated by a ;, to $8, if $8 is . (lines 1 and 3 are examples). If that condition $8 is not . (line2 is an example) then that line is skipped and printed as is. The awk does execute but prints the output... (3 Replies)
I am trying to use awk to check if each $2 in file1 falls between $2 and $3 of the matching $4 line of file2. If it does then in $5 of file2, exon if it does not intron. I think the awk below will do that, but I am struggling trying to is add a calculation that if the difference is less than 10,... (27 Replies)
Discussion started by: cmccabe
27 Replies
LEARN ABOUT DEBIAN
asntool
ASNTOOL(1) NCBI Tools User's Manual ASNTOOL(1)NAME
asntool - process ASN.1 module specifications
SYNOPSIS
asntool [-] [-B filename] [-D N] [-G] [-I str] [-J type] [-K str] [-L str] [-M filename,...] [-P str] [-Q] [-S filename] [-T filename] [-V]
[-X filename] [-Z] [-b N] [-d filename] [-e filename] [-f filename] [-l filename] -m filename [-o filename] [-p filename] [-t str]
[-v filename] [-w N] [-x filename]
DESCRIPTION
asntool reads, validates, and displays ASN.1 module specifications.
OPTIONS
A summary of options is included below.
- Print usage message
-B filename
Generate objects and code in files named filename.*
-D N Debugging level for code generation:
0 No debugging (default)
1 Shallow debugging
2 Deep debugging
3-9 Same as 2
-G Generate object loader .c and .h files
-I str Put "#include str" in generated .c file
-J type
Register type type with object manager
-K str In generated .c, force name of #included asn header to str
-L str Label registered type as str
-M filename,...
Search the ASN.1 modules in filename,... for external references
-P str XML module prefix for DOCTYPE
-Q Use quoted syntax form for generated include files
-S filename
Send debugging output to filename rather than stderr
-T filename
Dump ASN.1 tree to filename
-V Force CHOICE objects to use custom structures rather than ValNodePtrs, for compatibility with some old hand-coded object loaders.
-X filename
Write XML DTD to filename. If filename is "m", print each module to a separate file.
-Z Bit twiddle for optional zero value base slots
-b N Use N-byte buffers (default = 1024; anything between 512 and 10000 is legal)
-d filename
Read binary values from filename (requires -t)
-e filename
Write binary values to filename
-f filename
Write ASN.1 module to filename
-l filename
Write ASN.1 loader to filename
-m filename
Read ASN.1 module from filename
-o filename
Write header to filename
-p filename
Write print values to filename
-t str Expect binary values to have type str
-v filename
Read print values from filename
-w N Limit values in #defines to N bits (default = 31; anything between 31 and 128 is legal)
-x filename
Write XML data to filename
AUTHOR
The National Center for Biotechnology Information.
NCBI 2010-09-01 ASNTOOL(1)