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Full Discussion: how to do GRID COMPUTING?
Special Forums UNIX and Linux Applications High Performance Computing how to do GRID COMPUTING? Post 302282502 by otheus on Saturday 31st of January 2009 11:24:38 AM
Old 01-31-2009
You don't have to install a "cluster" for two (or three or four) machines. Just get something like "pdsh", which will allow you to easily run the same command in parallel across different machines. The command can use its hostname to determine which configuration or data file to read. You can do things like:
Code:
pdsh -w host1,host2 find /

to get all the files on both computers. You just need to enable rsh/rlogin without passwords to work.

There's also a project called "MOSIX" which uses additional hosts' memory as if it were local memory. Processes can be migrated to other computers. No changes to the source code or executables are needed; however, it only works with Linux servers whose kernels have been patched. (Or run a special, pre-built kernel.)

Academic distributed computing usually involves an MPI implementation, such as OpenMPI . This involves writing software using a special API to enable parallelism. You can typically run MPI programs on a heterogeneous network of Linux and non-Linux servers.


Neo mentioned Condor. The main point of Condor is managing resources in a cluster. However, it alone does not enable two or machines to be a "cluster". Further, it's rather pointless to use Condor on a very small network with only one or two users -- like using a logistics company every morning to tell you what order to get up, shower, shave, eat breakfast, take out the trash, and go to work.

He also mentioned Oscar. This is a handy installation tool to help you convert a few (or many) machines into a cluster. I haven't used it, as it was still alpha ware when I last looked at it. If you don't mind starting from scratch, you can build a cluster with Rocks, which I highly recommend. Again, if we're talking only a few hosts, however, it's overkill.

If you have one system, and want to duplicate that installation to a couple of other (nearly identical) hardware, you can use "systemimager-flamethrower" which uses "rsync" to copy one sever's configuration to another.

To actually do GRID computing, you probably need the Globus Toolkit, or perhaps if you're in Europe, Glite. You'll need to get a public/private key pair for yourself that is recognized by one of the Grid communities, and probably ask to get assigned to an existing "Virtual Organization".

All these pieces fit together. The underlying cluster mechanics can be generally either MPI or MOSIX or "dumb" parallelism with pdsh (or dumber with straight rsh), while the resource management and job scheduling can be done with Condor. You use Rocks or Oscar to configure and install the software on your cluster hosts, and then you enable it to do grid/cloud computing using the Globus Toolkit.
 

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GLOBUS-UPDATE-CERT(8)					      GSI-C OpenSSL Commands					     GLOBUS-UPDATE-CERT(8)

NAME
globus-update-certificate-dir - Update symlinks in the trusted CA directory SYNOPSIS
globus-update-certificate-dir [-help] [-d DIRECTORY] DESCRIPTION
The globus-update-certificate-dir program creates symlinks between files (CA certificates, certificate revocation lists, signing policy, and certificate request configuration files) using the certificate hash the installed version of OpenSSL uses. OpenSSL 1.0.0 uses a different name hashing algorithm than previous versions, so CA distributions created with older versions of OpenSSL might not be able to locate trusted CAs and related files. Running globus-update-certificate-dir against a trusted CA directory will add symlinks to the files to the hash if needed. The full set of command-line options to globus-update-certificate-dir consists of: -help Display a help message to standard output and exit -d DIRECTORY Create links in the trusted CA directory DIRECTORY instead of using the default search path. ENVIRONMENT
If the following variables affect the execution of globus-update-certificate-dir X509_CERT_DIR Default trusted certificate directory. HOME Path to the current user's home directory. GLOBUS_LOCATION Path to the Globus installation. University of Chicago 02/18/2010 GLOBUS-UPDATE-CERT(8)
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