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Solaris
Install SUN O/S 5.9 on Sparc Sunfire 280R
Post 302279590 by lamoul on Friday 23rd of January 2009 07:29:18 AM
01-23-2009
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LEARN ABOUT DEBIAN
saint-spc-ctrl
SAINT-SPC-CTRL(1) General Commands Manual SAINT-SPC-CTRL(1) NAME
saint-spc-ctrl - run SAINT with control data SYNOPSIS
saint-spc-ctrl [interactionFile] [preyFile] [baitFile] [nburnin] [niter] [lowMode] [minFold] [normalize] DESCRIPTION
nburnin = 2000: number of burn-in iterations in MCMC. niter = 10000: number of main iterations in MCMC. lowMode = 0/1 : exclude extremely high counts in the model. - If baits are densely connected or dataset is small (few baits), use 1. - otherwise, use 0. minFold = 0/1 : forcing separation between true and false distributions. - If user wishes to allow typical contaminants with significant differential enrichment over control purifications, use 0. - otherwise, use 1. normalize = 0/1 : divide the counts by the total spectral counts in each IP. nburnin = 2000: number of burn-in iterations in MCMC. niter = 10000: number of main iterations in MCMC. lowMode = 0/1 : exclude extremely high counts in the model. - If baits are densely connected or dataset is small (few baits), use 1. - otherwise, use 0. minFold = 0/1 : forcing separation between true and false distributions. - If user wishes to allow typical contaminants with significant differential enrichment over control purifications, use 0. - otherwise, use 1. normalize = 0/1 : divide the counts by the total spectral counts in each IP. SEE ALSO
You can download a PDF file with more detailed instructions from http://sourceforge.net/projects/saint-apms/files/ which is called saint-vignette-<YYYYMonDD>.pdf. User Commands April 2012 SAINT-SPC-CTRL(1)