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Top Forums Shell Programming and Scripting How can I calculate the total of nucleotide in Unix?What command line I should type? Post 302279079 by patrick chia on Thursday 22nd of January 2009 12:46:01 AM
Old 01-22-2009
How can I calculate the total of nucleotide in Unix?What command line I should type?

For example, if I have the file whose content are:
>HWI-EAS382_30FC7AAXX:7:1:927:1368
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:7:1:924:1373
ACGAACTTTAAAGCACCTCTTGGCTCGTATGCCGTC

I want my output calculate the total of nucleotide. So my output should look like this:
>HWI-EAS382_30FC7AAXX:7:1:927:1368
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 36
>HWI-EAS382_30FC7AAXX:7:1:924:1373
ACGAACTTTAAAGCACCTCTTGGCTCGTATGCCGTC 36
 

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MBKPS(3)						       MBK UTILITY FUNCTIONS							  MBKPS(3)

NAME
mbkps - mbk process state ORIGIN
This software belongs to the ALLIANCE CAD SYSTEM developed by the ASIM team at LIP6 laboratory of Universite Pierre et Marie CURIE, in Paris, France. Web : http://asim.lip6.fr/recherche/alliance/ E-mail : alliance-users@asim.lip6.fr SYNOPSYS
#include "mut.h" void mbkps() DESCRIPTION
mbkps does some functions calls and gathers informations about time and memory spend during a program run. encouraged. EXAMPLE
#include "mut.h" #include "mlo.h" lofig_list *check_flat(pt) lofig_list *pt; { mbkps(); pt = rflattenlofig(pt, YES, NO); mbkps(); return pt; } that would output something like : mbk stats : 1 call user time : 0 sec system time : 0 sec real size : 504 k mbkalloc peak size : 68 k mallinfo size : 96 k mbk stats : 2 call user time : 1 sec system time : 0 sec real size : 924 k mbkalloc peak size : 2560 k mallinfo size : 512 k SEE ALSO
mbk(1), getrusage(3), mallinfo(3V). BUG REPORT
This tool is under development at the ASIM department of the LIP6 laboratory. We need your feedback to improve documentation and tools. ASIM
/LIP6 October 1, 1997 MBKPS(3)
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