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Full Discussion: High Performance Computing
Special Forums UNIX and Linux Applications High Performance Computing High Performance Computing Post 302278833 by otheus on Wednesday 21st of January 2009 09:30:23 AM
Old 01-21-2009
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Originally Posted by humbletech99
1. CPU intensive computation of a single task
Q1: What percentage of the operations are floating point? Do you need double-precision? (Usually the answer is yes).

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2. Parallel computation of a task broken down into pieces
What's the expected ratio between computation time and communication time between the pieces. Medium ratio: do some computation, then send intermediate results to all neighbors, then do some more computation. Low ratio: compute, send a result, wait for a message, compute, send a result, and so on. High ratio: the CPUs crunch, crunch, crunch, then finally send results to a central task which does a final computation.

This is important in deciding what kind of network capacity you will need.
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3. Storage across many commodity nodes with scalability and i/o performance
How about reliability? Commodity nodes means high rate of disk failures and/or node failures. Can you bear with frequent filesystem downtime? Or will you need high availability on this filesystem?

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4. The solutions do not need to be geographically dispersed, same server room is fine.
Does your budget include life operating costs? Does your server room have specifications for lb/ft^2 ? One institution I worked at discovered that the building was designed for a certain amount of weight density -- even in the server room. It turns out that putting more than about 8 computer racks in the room exceeded this density! So we had the room, but adding more racks might make the floor unstable, especially given that this building was in a geographically active area (about 1 4+ quake every 2 to 3 years).
 

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PMTRIMNAMESPACE(3)					     Library Functions Manual						PMTRIMNAMESPACE(3)

NAME
pmTrimNameSpace - prune a performance metrics name space C SYNOPSIS
#include <pcp/pmapi.h> int pmTrimNameSpace(void); cc ... -lpcp DESCRIPTION
If the current Performance Metrics Application Programming Interface (PMAPI) context corresponds to a version 1 archive log of Performance Co-Pilot (PCP) performance metrics (as collected by pmlogger(1) -V1), then the currently loaded Performance Metrics Name Space (PMNS), is trimmed to exclude metrics for which no description can be found in the archive. The PMNS is further trimmed to remove empty subtrees that do not contain any performance metric. Since PCP archives usually contain some subset of all metrics named in the default PMNS, pmTrimNameSpace effectively trims the applica- tion's PMNS to contain only the names of the metrics in the archive. Since PCP 2.0, pmTrimNameSpace is only needed for dealing with version 1 archives. Version 2 archives actually store the "trimmed" PMNS. Prior to any trimming, the PMNS is restored to the state as of the completion of the last pmLoadASCIINameSpace(3) or pmLoadNameSpace(3), so the effects of consecutive calls to pmTrimNameSpace with archive contexts are not additive. If the current PMAPI context corresponds to a host and a pmLoadASCIINameSpace(3) or pmLoadNameSpace(3) call was made, then the PMNS reverts to all names loaded into the PMNS at the completion of the last pmLoadASCIINameSpace(3) or pmLoadNameSpace(3), i.e. any trimming is undone. On success, pmTrimNameSpace returns zero. SEE ALSO
pmlogger(1), PMAPI(3), pmLoadASCIINameSpace(3), pmLoadNameSpace(3), pmNewContext(3) and pmns(5). DIAGNOSTICS
PM_ERR_NOPMNS you must have loaded a PMNS using pmLoadASCIINameSpace(3) or pmLoadNameSpace(3) before calling pmTrimNameSpace PM_ERR_NOCONTEXT the current PMAPI context is invalid Performance Co-Pilot PCP PMTRIMNAMESPACE(3)
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