Actually that first field is not an amino acid. Field 2 and field 3 must be different from each other. If this understanding is right, then
Code:
$
$ cat file
giNumber RefAminoAcid VarAminoAcid
10190711 P P
10190711 D D
109255248 I A
110349771 A D
$
$
$ awk '$2 != $3' file
giNumber RefAminoAcid VarAminoAcid
109255248 I A
110349771 A D
$
$
The following program takes two command line arguments.
I want the second argument (fileCount) to be stored/printed as a int value. I tried my best to typecast the char to int (check the printf statement at last) but is not working...the output is some junk value.
This program is in its... (3 Replies)
For example, if I have the file whose content are:
>HWI-EAS382_30FC7AAXX:7:1:927:1368
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:7:1:924:1373
ACGAACTTTAAAGCACCTCTTGGCTCGTATGCCGTC
I want my output calculate the total of nucleotide. So my output should look like this:... (2 Replies)
I have a file from which the Header and the Trailer lines need to be removed. They are confirmed to be the first and the last lines in the file.
I have tried a few commands, but not successful yet. It needs to be implemented urgently, hence any help is greatly appreciated.
Raghu
----------... (1 Reply)
I want to add a "-r <remote_host>" option to my ksh script, causing the script to run a script of the same name on the specified remote host. The remote invocation should itself include all the command-line options of the original invocation, less the -r option.
For example, this invocation:
... (7 Replies)
CREATE TYPE "SUPERB"."OE_L2_FOOTERDATA_REC"
OID '1232323232' IS OBJECT
(
AWLSTrxId NUMBER,
AdjPurchaseAmount NUMBER,
Network NUMBER,
ConfigVersion NUMBER
);
/
I wanted my output to be as follow:
CREATE TYPE OE_L2_FOOTERDATA_REC
OID '1232323232'... (7 Replies)
Hi All,
I am trying to find out type of AIX servers , for eg : server A is eServer p5 520 , server B is pSeries 630-6C4 etc.
Can some one suggest me the best way to retrive this information through command line.
is there any direct command or script by which i can retrieve this information... (9 Replies)
I am trying to write a bash script that would be able to read DNA sequences (each line in the file is a sequence) from a file, where sequences are separated by an empty line. I am then to find the amino acid that these DNA sequences encode per codon (each group of three literals.) For example, if I... (3 Replies)
I have a eg file op.txt
This is a cat
This is a fat cat
This is a fat black cat
I want to remove only the word cat from the first alone .can somebody help.
please do wrap your samples in CODE TAGS
As per forum rules. (7 Replies)
Discussion started by: Sharks
7 Replies
LEARN ABOUT ULTRIX
crontab
crontab(5) File Formats Manual crontab(5)Name
crontab - clock daemon table file
Syntax
/usr/lib/crontab
Description
The command executes at specified dates and times according to the instructions in the file. The file consists of lines with six fields
each. The format for a line is as follows:
minute hour day month weekday command
The following list defines each field in the line:
minute (0-59) The exact minute that the command sequence executes.
hour (0-23) The hour of the day that the command sequence executes.
day (1-31) The day of the month that the command sequence executes.
month (1-12) The month of the year that the command sequence executes.
weekday (1-7) The day of the week that the command sequence executes. Monday = 1, Tuesday = 2, and so forth.
command The complete command sequence variable that is to be executed. Note that the command string must conform to Bourne shell
syntax.
The first five integer fields may be specified as follows:
o A single number in the specified range
o Two numbers separated by a minus, meaning a range inclusive
o A list of numbers separated by commas, meaning any of the numbers
o An asterisk meaning all legal values
The sixth field is a string that is executed by the shell at the specified times. A percent sign (%) in this field is translated to a new-
line character. Only the first line of the command field, up to a percent sign (%) or end of line, is executed by the shell. The other
lines are made available to the command as standard input.
Examples
The following example is part of a file:
# periodic things
0,15,30,45 * * * * (echo '^M' `date`; echo '') >/dev/console
0,15,30,45 * * * * /usr/lib/atrun
# daily stuff
5 4 * * * sh /usr/adm/newsyslog
15 4 * * * ( cd /usr/preserve; find . -mtime +7 -a -exec rm -f {} ; )
20 4 * * * find /usr/msgs -mtime +21 -a ! -perm 444 -a ! -name bounds
-a -exec rm -f {} ;
# NOTE: The above line is wrapped.
# local cleanups
30 4 * * * find /usr/spool/mqueue -type f -mtime +5 -name df-exec rm {} ;
35 4 * * * find /usr/spool/mqueue -type f -mtime +5 -name tf-exec rm {} ;
40 4 * * * find /usr/spool/rwho -type f -mtime +21 -exec rm {} ;
#
# redirecting error output
0 17 * * 1,3,5 /bin/tar -cv /usr/sysads/smith > /dev/console 2>&1
#
FilesSee Alsosh(1), cron(8)
Guide to System Environment Setup
crontab(5)
01-20-2009
