Actually that first field is not an amino acid. Field 2 and field 3 must be different from each other. If this understanding is right, then
Code:
$
$ cat file
giNumber RefAminoAcid VarAminoAcid
10190711 P P
10190711 D D
109255248 I A
110349771 A D
$
$
$ awk '$2 != $3' file
giNumber RefAminoAcid VarAminoAcid
109255248 I A
110349771 A D
$
$
The following program takes two command line arguments.
I want the second argument (fileCount) to be stored/printed as a int value. I tried my best to typecast the char to int (check the printf statement at last) but is not working...the output is some junk value.
This program is in its... (3 Replies)
For example, if I have the file whose content are:
>HWI-EAS382_30FC7AAXX:7:1:927:1368
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:7:1:924:1373
ACGAACTTTAAAGCACCTCTTGGCTCGTATGCCGTC
I want my output calculate the total of nucleotide. So my output should look like this:... (2 Replies)
I have a file from which the Header and the Trailer lines need to be removed. They are confirmed to be the first and the last lines in the file.
I have tried a few commands, but not successful yet. It needs to be implemented urgently, hence any help is greatly appreciated.
Raghu
----------... (1 Reply)
I want to add a "-r <remote_host>" option to my ksh script, causing the script to run a script of the same name on the specified remote host. The remote invocation should itself include all the command-line options of the original invocation, less the -r option.
For example, this invocation:
... (7 Replies)
CREATE TYPE "SUPERB"."OE_L2_FOOTERDATA_REC"
OID '1232323232' IS OBJECT
(
AWLSTrxId NUMBER,
AdjPurchaseAmount NUMBER,
Network NUMBER,
ConfigVersion NUMBER
);
/
I wanted my output to be as follow:
CREATE TYPE OE_L2_FOOTERDATA_REC
OID '1232323232'... (7 Replies)
Hi All,
I am trying to find out type of AIX servers , for eg : server A is eServer p5 520 , server B is pSeries 630-6C4 etc.
Can some one suggest me the best way to retrive this information through command line.
is there any direct command or script by which i can retrieve this information... (9 Replies)
I am trying to write a bash script that would be able to read DNA sequences (each line in the file is a sequence) from a file, where sequences are separated by an empty line. I am then to find the amino acid that these DNA sequences encode per codon (each group of three literals.) For example, if I... (3 Replies)
I have a eg file op.txt
This is a cat
This is a fat cat
This is a fat black cat
I want to remove only the word cat from the first alone .can somebody help.
please do wrap your samples in CODE TAGS
As per forum rules. (7 Replies)
Discussion started by: Sharks
7 Replies
LEARN ABOUT HPUX
urlcoding
URLCODING(3) libbash urlcoding Library Manual URLCODING(3)NAME
urlcoding -- a Libbash library for encoding and decoding URL's.
SYNOPSIS
urlEncodeString [-l] <STRING>
urlEncodeFile [-l] <FILE>
urlEncodeStream [-l]
urlDecodeString <STRING>
urlDecodeFile <FILENAME>
urlDecodeStream
DESCRIPTION
urlcoding is a collection of functions that convert ASCII-text to standard URL's and vice-versa. The AWK code used is based on code by Heiner
Steven <heiner.steven@odn.de>
The function list:
urlEncodeString Creates a URL from an ASCII string
urlEncodeFile Converts a file into URL-valid text
urlEncodeStream Converts standard input into URL-valid text
urlDecodeString Converts a URL-encoded text back to a plain-text form
urlDecodeFile Coverts URL-encoded text in a file back to plain text
urlDecodeStream Converts URL-encoded standard input to text
Detailed interface description follows.
The [-l] option for the encoding functions should be used when line-feed characters ('
') are to be encoded as well.
All functions print the results of their conversions to standard output.
The exit status of all functions is that of the command 'awk', with '0' for success
FUNCTIONS DESCRIPTIONS
urlEncodeString [-l] <STRING>
Converts STRING - a string of ASCII characters - to URL.
urlEncodeFile [-l] <FILE>
Coverts FILE of URL-encoded text to plain text
urlEncodeStream [-l]
Converts text from standard input to URL-text.
urlDecodeString <STRING>
Converts URL-encoded string STRING back to text.
urlDecodeFile <FILENAME>
Converts the URL-encoded text in FILE to plain text.
urlDecodeStream
Converts the URL-encoded text from standard input to plain-text
AUTHORS
Alon Keren <alon.keren@gmail.com>
SEE ALSO ldbash(1), libbash(1)Linux Epoch Linux
01-20-2009
