I dont understand how this would work. It looks to me like list would be the file name of my list file, and name would just read in each record in the file (??? I dont know if that is the right interpretation). Then, the grep command looks for lines in the data file that start with the subject numbers in the list file. However, If I print to >> $name.out, then I am going to have a new file for every subject... which would not be good. I want to group by experimental condition.
If I am interpreting this correctly, I would be able to to this and just define the output files name to explicly be the ec number, if I read from my individual lists that are already grouped by condition.
Is there a way to read in column $1 from the list file (which is the ec) and have that govern the name of the .out, and then read the second column of the list file (the subject number) into the grep search pattern pattern?
So the grep line would be something like this, i think:
I just dont know how to read in the master list file so that it would work.
I don't want to be too specific in case you are just doing homework, but you had spaces in your example, and it sounded like you wanted files such as 1.out, 2.out.
I am a FORTRAN guy and not a UNIX expert by any means so sorry if this sounds dumb, but all I want to do is have a UNIX script which reads data from a file (say 1000 lines worth, each row is a file name) and store it in an array to perform an operation on later. As maddeningly simple as this... (2 Replies)
Hi,
I have a data file formatted like this:
Ex:
Mike 3434
Jack 481
Peter 12
Alan 926
I want to get this data into 2 variables: "Names" and "Numbers" that I can using one "for" loop to get the value as Names and Numbers
Like this:
for i in 0 1 2 3
do
echo $Names
echo... (12 Replies)
This is shell programming assignment.
It needs to create a file called .std_dbrc contains
STD_DBROOT=${HOME}/class/2031/Assgn3/STD_DB
(which includes all my simple database files)
and I am gonna use this .std_dbrc in my script file (read the data from the database files)
like this: .... (3 Replies)
I have 3 columns in an excel sheet.
c1 c2 c3
EIP_ACCOUNT SMALL_TS_01 select A.* from acc;
All the above 3 col shoud be passed a variable in the unix code.
1.How to read an excel file
2.How to pass these data as variable to the unic script (1 Reply)
Hi Frnds...
I have an input file name.txt and another file named as source.. name.txt is having only one column and source is having around 25 columns...i need to read from name.txt line by line and search it in source file and then save the result in results file..
I have a rough idea about the... (15 Replies)
In the hello.htm have the sentenses:
Hello $name
How are you?
The perl script:
$name = "David";
open(HEADER,"hello.htm");
while(<HEADER>) { $html .= $_; }
close(HEADER);
print "$html";I making something about template. But it can't process the $name variable. (4 Replies)
I need to read a text file that contain columns of data, i need to read 1st column as a function to call, and others are the data i need to get into a ksh script.
I am quite new to ksh scripting, i am not very sure how to read each row line by line and the data in each columns of that line, set... (3 Replies)
I have input data looks like this which is a part of a csv file
7,1265,76548,"0102:04"
8,1266,76545,"0112:04"
I need to make the output data should look like this and the output data will be part of text file:
7|1265000 |7654899 |A|
8|12660000 |76545999 |B|
The logic behind the... (6 Replies)
Hi Team,
in /tmp folder i have thousands of log files i want to read each file and grep a value called "Calling This".
Each logfile name is different but it ends with .log.
How can i achieve this?
Please excuse if i did any mistake by not following forum standards. I will surely follow... (10 Replies)
We have the data looks like below in a log file.
I want to generat files based on the string between two hash(#) symbol like below
Source:
#ext1#test1.tale2 drop
#ext1#test11.tale21 drop
#ext1#test123.tale21 drop
#ext2#test1.tale21 drop
#ext2#test12.tale21 drop
#ext3#test11.tale21 drop... (5 Replies)
Discussion started by: Sanjeev G
5 Replies
LEARN ABOUT DEBIAN
gmt_shell_functions
GMT_SHELL_FUNCTIONS.SH(1gmt) Generic Mapping Tools GMT_SHELL_FUNCTIONS.SH(1gmt)NAME
gmt_shell_functions.sh - Practical functions to be used in GMT bourne shell scripts
SYNOPSIS
gmt_init_tmpdir
gmt_remove_tmpdir
gmt_clean_up [prefix]
gmt_message message
gmt_abort message
gmt_nrecords file(s)
gmt_nfields string
gmt_get_field string
gmt_get_region file(s) [options]
gmt_get_gridregion file [options]
gmt_get_map_width -R -J
gmt_get_map_height -R -J
gmt_set_psfile file
gmt_set_framename prefix framenumber
gmt_set_framenext framenumber
DESCRIPTION
gmt_shell_functions.sh provides a set of functions to Bourne (again) shell scripts in support of GMT. The calling shell script should
include the following line, before the functions can be used:
. gmt_shell_functions.sh
Once included in a shell script, gmt_shell_functions.sh allows GMT users to do some scripting more easily than otherwise. The functions
made available are:
gmt_init_tmpdir
Creates a temporary directory in /tmp or (when defined) in the directory specified by the environment variable TMPDIR. The name of
the temporary directory is returned as environment variable GMT_TMPDIR. This function also causes GMT to run in `isolation mode',
i.e. all temporary files will be created in GMT_TMPDIR and the .gmtdefaults file will not be adjusted.
gmt_remove_tmpdir
Removes the temporary directory and unsets the GMT_TMPDIR environment variable.
gmt_cleanup
Remove all files and directories in which the current process number is part of the file name. If the optional prefix is given then
we also delete all files and directories that begins with the given prefix.
gmt_message
Send a message to standard error.
gmt_abort
Send a message to standard error and exit the shell.
gmt_nrecords
Returns the total number of lines in file(s)
gmt_nfields
Returns the number of fields or words in string
gmt_get_field
Returns the given field in a string. Must pass string between double quotes to preserve it as one item.
gmt_get_region
Returns the region in the form w/e/s/n based on the data in table file(s). Optionally add -Idx/dy to round off the answer.
gmt_get_gridregion
Returns the region in the form w/e/s/n based on the header of a grid file. Optionally add -Idx/dy to round off the answer.
gmt_map_width
Expects the user to give the desired -R -J settings and returns the map width in the current measurement unit.
gmt_map_height
Expects the user to give the desired -R -J settings and returns the map height in the current measurement unit.
gmt_set_psfile
Create the output PostScript file name based on the base name of a given file (usually the script name $0).
gmt_set_framename
Returns a lexically ordered filename stem (i.e., no extension) given the file prefix and the current frame number, using a width of
6 for the integer including leading zeros. Useful when creating animations and lexically sorted filenames are required.
gmt_set_framenext
Accepts the current frame integer counter and returns the next integer counter.
NOTES
1. These functions only work in the bourne shell (sh) and their derivatives (like ash, bash, ksh and zsh). These functions do not work in
the C shell (csh) or their derivatives (like tcsh), and cannot be used in DOS batch scripts either.
2. gmt_shell_functions.sh were first introduced in GMT version 4.2.2 and have since been regularly expanded with other practical scripting
short-cuts. If you want to suggest other functions, please do so by mailing to the GMT mailing list: gmt-help@lists.hawaii.edu.
SEE ALSO GMT(1), sh(1), bash(1), minmax(1), grdinfo(1)GMT 4.5.7 15 Jul 2011 GMT_SHELL_FUNCTIONS.SH(1gmt)