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Top Forums Shell Programming and Scripting calling a program (w/ params) from within shell Post 302268175 by siba.s.nayak on Monday 15th of December 2008 06:22:46 AM
Old 12-15-2008
If you know how to pass parameters to a FOTRAN file. then hust call the obj file from you script. and pass the args to the object file.
 

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Bio::Factory::ObjectFactoryI(3pm)			User Contributed Perl Documentation			 Bio::Factory::ObjectFactoryI(3pm)

NAME
Bio::Factory::ObjectFactoryI - A General object creator factory SYNOPSIS
# see the implementations of this interface for details but # basically my $obj = $factory->create(%args); DESCRIPTION
This interface is the basic structure for a factory which creates new objects. In this case it is up to the implementer to check arguments and initialize whatever new object the implementing class is designed for. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason@bioperl.org APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ create Title : create Usage : $factory->create(%args) Function: Create a new object Returns : a new object Args : hash of initialization parameters create_object Title : create_object Usage : $obj = $factory->create_object(%args) Function: Create a new object. This is supposed to supercede create(). Right now it only delegates to create(). Returns : a new object Args : hash of initialization parameters perl v5.14.2 2012-03-02 Bio::Factory::ObjectFactoryI(3pm)
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