hi frnds
i m having prb while matching a numerical num...
+ is not working for me... ( ?? )
so i m achieving the criteria with \{1,\} ( pl suggest if i m wrong )
nw the prb is.. i dont want to match the number with all zeros in it..
eg 00000 or 0000000 etc etc...
pl help..
... (3 Replies)
Hi,
I am trying to grep for the following type of string from a document given below:
12637 1239 3356 12956 7004 7004 7004 13381 13381
*> 12.0.1.63 0 7018 21872 ?
* 208.51.134.254 53 0 3549 7018 21872 ?... (1 Reply)
Can anyone give the detailed explanation on regex search
i want to know the use of regex in sed and awk also......
the operators like ^,.,* ....etc i need it with some example.....kindly help on this.
I gone through the man pages also..but i was not clear......... (1 Reply)
How do I write a regular expression to capture the comments of Pascal which are usually delimted by (* and *) or { and }? And also I need a regular expression to express financial quantities in American Notation. They have a leading dollar sign and an optional string of asteriks,a string of decimal... (1 Reply)
I would like to search strings composed by only one type of charachter for example
only strings composed by the charachter 'b'
is it right?
$egrep '\<(b+)+\>' filename
Could be there some side effects?
Regards. (1 Reply)
I am having trouble parsing rpm filenames in a shell script.. I found a snippet of perl code that will perform the task but I really don't have time to rewrite the entire script in perl. I cannot for the life of me convert this code into something sed-friendly:
if ($rpm =~ /(*)-(*)-(*)\.(.*)/)... (1 Reply)
I have a file of protein sequences with headers (my source file). Based on a list of IDs (which are included in some of the headers), I'd like to print out only the specified sequences, with only the ID as header.
In other words, I'd like to search source.txt for the terms in IDs.txt, and print... (3 Replies)
I am not a big expert in regex and have just little understanding of that language.
Could you help me to understand the regular Perl expression:
^(?!if\b|else\b|while\b|)(?:+?\s+){1,6}(+\s*)\(*\) *?(?:^*;?+){0,10}\{
------
This is regex to select functions from a C/C++ source and defined in... (2 Replies)
Here i am writing a script to check&display only the valid mail address from a file
echo "Plz enter the Target file name with path"
read path
if
then
echo "The valid mail address are:"
email=$(grep -E -o "\b+@+\.{2,6}\b" $path )
echo "$email"
fi
The file contains the data like this:... (6 Replies)
I'm trying to get some exclusions into our sendmail regular expression for the K command. The following configuration & regex works:
LOCAL_CONFIG
#
Kcheckaddress regex -a@MATCH
+<@+?\.++?\.(us|info|to|br|bid|cn|ru)
LOCAL_RULESETS
SLocal_check_mail
# check address against various regex... (0 Replies)
Discussion started by: RobbieTheK
0 Replies
LEARN ABOUT DEBIAN
bio::symbol::alphabet
Bio::Symbol::Alphabet(3pm) User Contributed Perl Documentation Bio::Symbol::Alphabet(3pm)NAME
Bio::Symbol::Alphabet - BSANE/BioCORBA compliant symbol list alphabet
SYNOPSIS
{
my $alphabet = Bio::Symbols::Alphabet->new(-symbols => [ @s ],
-subalphabets => [ @alphas ] );
my @symbols = $alphabet->symbols;
my @subalphas = $alphabet->alphabets;
if( $alphabet->contains($symbol) ) {
# do something
}
}
DESCRIPTION
Alphabet contains set of symbols, which can be concatenated to form symbol lists. Sequence string, for example, is stringified
representation of the symbol list (tokens of symbols).
This module was implemented for the purposes of meeting the BSANE/BioCORBA spec 0.3 only.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Symbol::Alphabet->new();
Function: Builds a new Bio::Symbol::Alphabet object
Returns : Bio::Symbol::Alphabet
Args : -symbols => Array ref of Bio::Symbol::SymbolI objects
-subalphas=> Array ref of Bio::Symbol::AlphabetI objects
representing sub alphabets
AlphabetI Interface methods
symbols
Title : symbols
Usage : my @symbols = $alphabet->symbols();
Function: Get/Set Symbol list for an alphabet
List of symbols, which make up this alphabet.
Returns : Array of Bio::Symbol::SymbolI objects
Args : (optionalalphabets) Array of Bio::Symbol::SymbolI objects
alphabets
Title : alphabets
Usage : my @alphabets = $alphabet->alphabets();
Function: Get/Set Sub Alphabet list for an alphabet
Sub-alphabets. E.g. codons made from DNAxDNAxDNA alphabets
Returns : Array of Bio::Symbol::AlphabetI objects
Args : (optional) Array of Bio::Symbol::AlphabetI objects
contains
Title : contains
Usage : if($alphabet->contains($symbol)) { }
Function: Tests of Symbol is contained in this alphabet
Returns : Boolean
Args : Bio::Symbol::SymbolI
perl v5.14.2 2012-03-02 Bio::Symbol::Alphabet(3pm)