Dear friends,
please tell me how to find the files which are existing in the current directory, but it sholud not search in the sub directories..
it is like this,
current directory contains
file1, file2, file3, dir1, dir2
and dir1 conatins
file4, file5
and dir2 contains
file6,... (9 Replies)
Hi,
I have defined an array which holds a couple of elements which are nothing but files names. I want to find the files in a directory for the matching file name(array elements) with less than 1 day old.
When I am trying to execute the code (as below), it gives an error.
Your help in this... (1 Reply)
Hello,
I am working on solving an NP-Complete problem, so it is very important that operations and data with limited integer-argument ranges be computed using immutable look-up-tables contained entirely in CPU cache. Retrieval of the look-up-table data must never leave the CPU once initially... (6 Replies)
Hi,
I have line in input file as below:
3G_CENTRAL;INDONESIA_(M)_TELKOMSEL;SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL
My expected output for line in the file must be :
"1-Radon1-cMOC_deg"|"LDIndex"|"3G_CENTRAL|INDONESIA_(M)_TELKOMSEL"|LAST|"SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL"
Can someone... (7 Replies)
Hello everyone
Sorry I have to add another sed question. I am searching a log file and need only the first 2 occurances of text which comes after (note the space) "string " and before a ",". I have tried
sed -n 's/.*string \(*\),.*/\1/p' filewith some, but limited success. This gives out all... (10 Replies)
I have a file1.txt
file1.txt
F-120009210","Felix","U-M-F-F-F-","white","yes","no","U-M-F-F-F-","Bristol","RI","true"
F-120009213","Fluffy","U-F-","white","yes","no","M-F-","Warwick","RI","true"
U-120009217","Lity","U-M-","grey","yes","yes","","Fall River","MA","true"... (4 Replies)
I have a bunch of random character lines like ABCEDFG. I want to find all lines with "A" and then change any "E" to "X" in the same line. ALL lines with "A" will have an "X" somewhere in it. I have tried sed awk and vi editor. I get close, not quite there. I know someone has already solved this... (10 Replies)
These three finds worked as expected:
$ find . -iname "*.PDF"
$ find . -iname "*.PDF" \( ! -name "*_nobackup.*" \)
$ find . -path "*_nobackup*" -prune -iname "*.PDF"
They all returned the match:
./folder/file.pdf
:b:
This find returned no matches:
$ find . -path "*_nobackup*" -prune... (3 Replies)
I need to find two matches in the output from ps. I am searching with ps -ef |grep mysql for:
my.cnf
/bin/sh /usr/bin/mysqld_safe --defaults-file=/data/mysql/master/agis_core/etc/my.cnf
after this match I want to search back and match the hostname which is x number of lines back, above the... (2 Replies)
Discussion started by: bash_in_my_head
2 Replies
LEARN ABOUT DEBIAN
seqfraggle
SEQFRAGGLE(1e) EMBOSS Manual for Debian SEQFRAGGLE(1e)NAME
seqfraggle - Removes fragment sequences from DHF files.
SYNOPSIS
seqfraggle -dhfinpath dirlist -thresh integer -dhfoutdir outdir
seqfraggle -help
DESCRIPTION
seqfraggle is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Protein:3D
Structure" command group(s).
OPTIONS
Input section
-dhfinpath dirlist
This option specifies the location of DHF files (domain hits files) or other sequence files (input). A 'domain hits file' contains
database hits (sequences) with domain classification information, in FASTA or EMBL formats. The hits are relatives to a SCOP or CATH
family and are found from a search of a sequence database. Files containing hits retrieved by PSIBLAST are generated by using
SEQSEARCH. Alternatively, SEQFRAGGLE will accept sequence or sequence sets in any of the common formats. Default value: ./
Required section
-thresh integer
This option specifies the percentage of median length for definition of fragments. SEQFRAGGLE first determines the median length of all
the sequences in the input file, then discards any hit sequences which are not within a threshold percentage of the median length. The
remaining sequences are written to the output file. Default value: 50
Output section
-dhfoutdir outdir
This option specifies the location of DHF files (domain hits files) (output). A 'domain hits file' contains database hits (sequences)
with domain classification information, in FASTA or EMBL formats. The hits are relatives to a SCOP or CATH family and are found from a
search of a sequence database. Files containing hits retrieved by PSIBLAST are generated by using SEQSEARCH. Alternatively, SEQFRAGGLE
will write output files in any of the common formats. Default value: ./
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
seqfraggle is fully documented via the tfm(1) system.
AUTHOR
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.
DOMSEARCH 0.1.0++20100721 08/11/2010 SEQFRAGGLE(1e)