Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Writing a script to work sequentially with bsub Post 302260501 by silky on Thursday 20th of November 2008 06:13:23 PM
Old 11-20-2008
Writing a script to work sequentially with bsub

Hi,
I am REALLY a newbie of Unix: hope this question is not too odd.
Here is my problem:
I have to submit jobs to a remote platform (an IBM BCX/5120).
To submit I have to
bsub < filename.jcf
and the .jcf file has usually the following content:

#!/bin/bash

#BSUB <commands of the bsub>
/usr/local/stata/stata -b //stata is StataMP for statistical analysis

Unfortunately, each job cannot last more than 6 hours (usually each last around 4 hours), and I would love to make them start sequentially:
any idea about how could I do it?

If you can help me, you'll save my sleep: I won't wake up every 6 hours in order to make the jobs work.
Moreover, since the weekend is approaching and my girlfriend would get pretty angry if I don't dedicate her enough time during the following 3 days, you'll probably save even my relationship!

Thank you very much,
f
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Script doesn't work, but commands inside work

Howdie everyone... I have a shell script RemoveFiles.sh Inside this file, it only has two commands as below: rm -f ../../reportToday/temp/* rm -f ../../report/* My problem is that when i execute this script, nothing happened. Files remained unremoved. I don't see any error message as it... (2 Replies)
Discussion started by: cheongww
2 Replies

2. Shell Programming and Scripting

Shell script to sort and execute files sequentially

Hi, I want to sort my files under a directory and execute them sequentially. For ex: my diir contains files: a_5.sql, ab_2.sql,abc_3.sql, acbd_1 ,ab_4.sql, etc. I want to execute the files based on the last number after underscore sequentially(i.e.. _1,_2,etc) . Can anybody help me? (5 Replies)
Discussion started by: MuraliKrisna
5 Replies

3. Shell Programming and Scripting

Any scenario where a script will not run sequentially when called?

Can a script that calls another script exit and end while the called script is still running? If so, how can this be made to happen? (1 Reply)
Discussion started by: Harleyrci
1 Replies

4. UNIX for Dummies Questions & Answers

crond not work after writing to cron log?

Yesterday I was testing out some cron commands and when i was check the /var/log/cron with vi editor I accidentally did :wq instead. Since then the log has not updated and I'm assuming no cronjob is running because looking at the log there's activities everyday there's some default stuff that... (5 Replies)
Discussion started by: orionoreo
5 Replies

5. Shell Programming and Scripting

Node selection with bsub

Hi! I am currently using the bsub command to submit jobs to a cluster and I need to specify the name of the node to which i want the job sent. What do I add to my .pbs script to specify this? Cheers (0 Replies)
Discussion started by: mancino
0 Replies

6. Shell Programming and Scripting

Unix Script -- Suggestions to list and kill PID's sequentially

Hi, I'm trying to write a script where i'm trying to grep the PID and the associated file and list them. Then execute the KILL command sequentially on the listed PID's for ".tra" files ==================================================== ps -aux | grep mine adm 27739 0.2 0.8 1131588... (12 Replies)
Discussion started by: murali1687
12 Replies

7. Shell Programming and Scripting

My script work on Linux but not work in sunos.

My script work on Linux but not work in sun os. my script. logFiles="sentLog1.log sentLog2.log" intial_time="0 0" logLocation="/usr/local/tomcat/logs/" sleepTime=600 failMessage=":: $(tput bold)Log not update$(tput rmso) = " successMessage="OK" arr=($logFiles)... (7 Replies)
Discussion started by: ooilinlove
7 Replies

8. Shell Programming and Scripting

Help with how to run multiple script with concurrent processes runs sequentially.

Hi, The problem detail is follows I have three individual scripts . SCRIPT A sh -x sqoop_channels_nc_daily_01.sh & sh -x sqoop_channels_nc_daily_02.sh & sh -x sqoop_channels_nc_daily_03.sh SCRIPT B sh -x sqoop_contacts_nc_daily_01.sh & sh -x sqoop_contacts_nc_daily_02.sh & sh -x... (1 Reply)
Discussion started by: H_bansal
1 Replies

9. UNIX for Dummies Questions & Answers

Bsub command

Hi everyone, I must write a Linux script for a biological analysis. I have an example for that which involves the "bsub" and "bsub-o" command, respectively. I cannot find a description for this command. Can you please help me? (2 Replies)
Discussion started by: Max_W
2 Replies

10. Shell Programming and Scripting

Bsub job does not execute the script

Hello, When I'm trying to send bsub job using script that executes fine in command line, I get nothing. I do this for testing purposes, and the script scr_test is just one line: pwd > outfile So when I'm executing it in command line: $ ./scr_test it works fine producing the outfile with... (2 Replies)
Discussion started by: Sergey Aliev
2 Replies
script(1)							   User Commands							 script(1)

NAME
script - make record of a terminal session SYNOPSIS
script [-a] [filename] DESCRIPTION
The script utility makes a record of everything printed on your screen. The record is written to filename. If no file name is given, the record is saved in the file typescript. See WARNINGS. The script command forks and creates a sub-shell, according to the value of $SHELL, and records the text from this session. The script ends when the forked shell exits or when Control-d is typed. OPTIONS
The following option is supported: -a Appends the session record to filename, rather than overwriting it. NOTES
script places everything that appears on the screen in filename, including prompts. ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +-----------------------------+-----------------------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +-----------------------------+-----------------------------+ |Availability |SUNWcsu | +-----------------------------+-----------------------------+ |CSI |Enabled | +-----------------------------+-----------------------------+ SEE ALSO
attributes(5) WARNINGS
script can pose a security risk when used in directories that are writable by other users (for example, /tmp), especially when run by a privileged user, that is, root. Be sure that typescript is not a link before running script. SunOS 5.11 30 Jan 2004 script(1)
All times are GMT -4. The time now is 06:16 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy