Hi,
I need to extract only a part of the filenames of some files. The files are named this way :
.tap_profile_SIT02
I want the "SIT02" part, which is not the same for each file. I was able to get what I want with bash, but not with ksh. Here is the command I used in bash :
find... (8 Replies)
I've many file like this
01-file
01_-_file
01_-_file
01_-_file
01_-_file
01-file
I would remove bold part from filename. Suggestions?Thanks (4 Replies)
Hi All,
I'm trying to get part of a filename and my skill with regular expression are lacking. I know I need to use SED but have no idea how to use it. I'm hoping that someone can help me out. The file names would be:
prefix<partwewant>suffix.extension
the prefix and suffix are always 3... (4 Replies)
Hi All,
I have the file & name is "/a/b/c/d/e/xyz.dat"
I need "/a/b/c/d/e/" from the above file name.
I tryning with echo and awk. But it not come. Please help me in this regard.
Thanks & Regards,
Dathu (3 Replies)
Hi All,
Thanks in Advance
I am working on a shell script. I need some assistance.
My Requirement:
1) There are some set of files in a directory like given below
OTP_UFSC_20120530000000_acc.csv
OTP_UFSC_20120530000000_faf.csv
OTP_UFSC_20120530000000_prom.csv... (0 Replies)
Hi All,
Thanks in Advance
I am working on a shell script. I need some assistance.
My code:
if
then
set "subscriber" "promplan" "mapping" "dedicatedaccount" "faflistSub" "faflistAcc" "accumulator"\
"pam_account";
for i in 1 2 3 4 5 6 7 8;... (0 Replies)
Hi All,
Thanks in Advance
Shell Script or Perl Script
I am working on a shell script. I need some assistance.
My Requirement:
1) There are some set of files in a directory like given below
OTP_UFSC_20120530000000_acc.csv
OTP_UFSC_20120530000000_faf.csv... (7 Replies)
Hi guys!
I have quite a lot of files like
all_10001_ct1212307460308.alf*
and I want to get rid of the first number for all at once like:
all_ct1212307460308.alf*
How can I do this in the shell? (12 Replies)
Hi All,
I have incoming source files abcmmyy.txt I need to extract the mmyy part from the filename and pass that to a variable . I really appreciate your quick response on this.
Thanks
raj (7 Replies)
Hi,
I am writing an ebuild for Gentoo Linux operating system.
Writing an ebuild is about Bash scripting where I am a newbie.
So, my ebuild must find a part of a specific filename.
Such a filaname my look like this:
libvclient_release_x64.so.740and I must to find the number at the and of... (18 Replies)
Discussion started by: csanyipal
18 Replies
LEARN ABOUT DEBIAN
bp_gccalc
BP_GCCALC(1p) User Contributed Perl Documentation BP_GCCALC(1p)NAME
gccalc - GC content of nucleotide sequences
SYNOPSIS
gccalc [-f/--format FORMAT] [-h/--help] filename
or
gccalc [-f/--format FORMAT] < filename
or
gccalc [-f/--format FORMAT] -i filename
DESCRIPTION
This scripts prints out the GC content for every nucleotide sequence from the input file.
OPTIONS
The default sequence format is fasta.
The sequence input can be provided using any of the three methods:
unnamed argument
gccalc filename
named argument
gccalc -i filename
standard input
gccalc < filename
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason@bioperl.org
HISTORY
Based on script code (see bottom) submitted by cckim@stanford.edu
Submitted as part of bioperl script project 2001/08/06
perl v5.14.2 2012-03-02 BP_GCCALC(1p)