Hi,
I am trying to remove trailing white spaces using this command in awk
nawk -F '|' '/^TR/{t = $4 }/^LN/{gsub(/ */,"");printf "%s|%s\n", t, $0 }' $i>>catman_852_files.txt
My delimiter is '|'.
THere are some description fields which are being truncated. I dont want to remove spaces... (1 Reply)
I have 5 column in sample txt file
where in i have to create report based upon 1,3 and 5 th column..
I have : in first and third coulmn. But I want to retain the colon of fifth coulmn and remove the colon of first column..
5th column contains String message (for example,... (7 Replies)
Hi,
I'm looking for a command that replaces spaces/tabs with pipe symbol and store the result to the same file instead of routing it to another file.
infile
outfile
Thanks. (11 Replies)
hy all,
i need case with input like this
1::||10334|11751|
2::10324|17541|||
i want output like this
1::||1033411751|
2::1032417541|||
how i can do that for get like output
thx before your advice (3 Replies)
Hi All,
I am trying to list the various dates for which the file is available in a directory using the command below, (& subsequently pass the command output to a loop)
Command :
ls dir|grep 'filename'|cut -d '_' -f1|cut -c1-8|tr '\n' ','
However, it is giving me an extra comma... (6 Replies)
I have input file like this
551|552|553|554|555|556|557|558|559|560
I need any one offset need to be blank for eg.
551|552|553||555|556|557|558|559|560
My Shell is csh (1 Reply)
Hi ,
I have file like this..
aaa|bbbb|cccc|dddd|fff|dsaaFFDFD|
Adsads|sas|sa|as|asa|saddas|dsasd|sdad|
dsas|dss|sss|sss|ddd|dssd|rrr|fddf|
www|fff|refd|dads|fsdf|00sd|
5fgdg|dfs00|d55f|sfds55|445fsd|55ds|sdf|
so I do no have any fix pattern and I want to remove extra... (11 Replies)
Hello All,
we have some 10 files wherein we are using the ASCII NULL as separator which is nothing but '^@' and we need to change it to pipe delimited file before loading to database. Most of the data seems to be fine but there are instances where this separator tends to appear in the middle of... (9 Replies)
Hello All,
I have a pipe delimited file and below is a sample data how it looks:
CS123 | | || 5897 | QXCYN87876
As stated above, the delimited files contains sometimes only spaces as data fields and sometimes there are extra spaces before/after numeric/character data fields. My requirement... (4 Replies)
First post, been browsing for 3 days and came out with nothing so far.
M3 C2 V5 D5 HH:FF A1-A2,A5-A6,A1-A2,A1-4 B4-B6,B2-B4,B4-B6,B1-B2output should be
M3 C2 V5 D5 HH:FF A1-A2,A5-A6,A1-A4 B2-B4,B4-B6,B1-B2On col 6 and 7 there are strings in form of Ax-Ax and Bx-Bx respectively. Each string are... (9 Replies)
Discussion started by: enrikS
9 Replies
LEARN ABOUT DEBIAN
csv2mipe
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)