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Shell Programming and Scripting
Why do we use sort before compare ?
Post 302257787 by yahyaaa on Thursday 13th of November 2008 04:55:46 AM
11-13-2008
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Hi,
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Hello All,
Iam using below method to sort and compare files. First iam doing sorting and changing the same file and then doing comparing and taking the final result to another file.
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Hi,
I have a file that needs to be converted:
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a, b, 4
a ,b, 5
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To make it easier, i gave following example. It is not homework or classwork. Instead, i have a huge csv file dump from tsql with 15 columns and around 300 rows. I was able to extract content that needs to be really converted. Here is the extract:
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Hello,
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I have 2 files (file_1 and file_2), I need to perform the following actions.
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LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1) NAME
vcf-compare - compare bgzipped and tabix indexed VCF files SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ... DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz) OPTIONS
-c, --chromosomes <list|file> Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future. -d, --debug Debugging information. Giving the option multiple times increases verbosity -H, --cmp-haplotypes Compare haplotypes, not only positions -m, --name-mapping <list|file> Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping per line in a file. The names are colon separated and must appear in the same order as the files on the command line. -R, --refseq <file> Compare the actual sequence, not just positions. Use with -w to compare indels. -r, --regions <list|file> Process the given regions (comma-separated list or one region per line in a file). -s, --samples <list> Process only the listed samples. Excluding unwanted samples may increase performance considerably. -w, --win <int> In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a SNP or an indel). -h, -?, --help This help message. vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)