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Shell Programming and Scripting
How to extract 3rd line 4th column of a file
Post 302254731 by paresh n doshi on Wednesday 5th of November 2008 03:49:37 AM
11-05-2008
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10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
hi;
i have a file.txt and its 9th, 10th and 11th line lines are:
RbsLocalCell=S2C1 maxPortIP 4 (this is 9th line)
RbsLocalCell=S3C1 maxPortIP 4 (this is 10th line)
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This is related to one of my previous post.. I have huge file currently I am using loop to read file and checking each line to build this single record, its taking much much time to parse those records.. I thought there should be a way to do this in awk or sed.
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I need to take one column of data and put it into the following format:
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5th line,6th line
...
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Hi All!
I trying to execute this perl script to extract a particular field in a text file, luckily it works. But, right now I would like to extract 3 more fields in the text file but couldnt get the right syntax on how to do it.
command is:
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I have a flatfile A.txt
date|products|notes|location
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Hi, I have a file with +/- 13000 lines and 4 column. I need to search the 3rd column for a word that begins with "SAP-" and move/skip it to the next column (4th). Because the 3rd column need to stay empty.
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89653 36891 OTR-60 SAP-2
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No Chr Pos Qual GT_1 GT_2
1. chr1 478493 595 A/G G/G
2. chr1 879243 700 A/T T/T
3. chr2 889922 1300 C/C C/C
4. chr2 1926372 300 T/A T/A
5. chr3 237474 500 G/C C/C
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#cat file
testing test! nipw asdkjasjdk ok! what !ok
host server1
check_ssh_disk!102.56.1.101!30!50!/
other
host server 2
des
check_ssh_disk!192.6.1.10!40!30!/
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50
30
#
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9. Shell Programming and Scripting
input
"A","B","C,D","E","F"
"S","T","U,V","W","X"
"AA","BB","CC,DD","EEEE","FFF"
required output:
"A","B","C,D","C,D","F"
"S", T","U,V","U,V","X"
"AA","BB","CC,DD","CC,DD","FFF"
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im trying to get
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LEARN ABOUT DEBIAN
fastx_quality_stats
FASTX_QUALITY_STATS(1) User Commands FASTX_QUALITY_STATS(1) NAME
fastx_quality_stats - FASTX Statistics DESCRIPTION
usage: fastx_quality_stats [-h] [-N] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.2 by A. Gordon (gordon@cshl.edu) [-h] = This helpful help screen. [-i INFILE] = FASTQ input file. default is STDIN. [-o OUTFILE] = TEXT output file. default is STDOUT. [-N] = New output format (with more information per nucleotide/cycle). The *OLD* output TEXT file will have the following fields (one row per column): column = column number (1 to 36 for a 36-cycles read solexa file) count = number of bases found in this column. min = Lowest quality score value found in this column. max = Highest quality score value found in this column. sum = Sum of quality score values for this column. mean = Mean quality score value for this column. Q1 = 1st quartile quality score. med = Median quality score. Q3 = 3rd quartile quality score. IQR = Inter-Quartile range (Q3-Q1). lW = 'Left-Whisker' value (for boxplotting). rW = 'Right-Whisker' value (for boxplotting). A_Count = Count of 'A' nucleotides found in this column. C_Count = Count of 'C' nucleotides found in this column. G_Count = Count of 'G' nucleotides found in this column. T_Count = Count of 'T' nucleotides found in this column. N_Count = Count of 'N' nucleo- tides found in this column. max-count = max. number of bases (in all cycles) The *NEW* output format: cycle (previously called 'column') = cycle number max-count For each nucleotide in the cycle (ALL/A/C/G/T/N): count = number of bases found in this column. min = Lowest quality score value found in this column. max = Highest quality score value found in this column. sum = Sum of quality score values for this column. mean = Mean quality score value for this column. Q1 = 1st quartile quality score. med = Median quality score. Q3 = 3rd quartile quality score. IQR = Inter-Quartile range (Q3-Q1). lW = 'Left-Whisker' value (for boxplotting). rW = 'Right-Whisker' value (for boxplotting). SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit http://hannonlab.cshl.edu/fastx_toolkit/commandline.html to get a better layout as well as an overview about connected FASTX tools. fastx_quality_stats 0.0.13.2 May 2012 FASTX_QUALITY_STATS(1)